Showing : qpcr • reset
3
votes
0
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500
views
Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects qPCR qPCRData
3.0 years ago jhackett ▴ 30
3
votes
4
replies
3.0k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 2.5 years ago by ▴ 380 • written 3.3 years ago by ▴ 660
1
vote
2
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1.6k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 450
1
vote
1
reply
1.8k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray qPCR limma
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 30
1
vote
7
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1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.3 years ago joe.d.moore.ii • 0
1
vote
3
replies
2.4k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 2.9 years ago by ▴ 60 • written 9.1 years ago by ▴ 40
1
vote
0
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1.0k
views
HTqPCR package data layout - how flexible is it?
qPCR qPCR
9.9 years ago Guest User ★ 13k
1
vote
4
replies
1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 6.8 years ago by ▴ 120 • written 6.8 years ago by ▴ 60
1
vote
1
reply
1.2k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.3 years ago boczniak767 ▴ 720
1
vote
0
replies
1.8k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR Normalization multtest limma siggenes
9.7 years ago • updated 7.3 years ago Gordon Smyth 50k
0
votes
3
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1.5k
views
RNASeq, differential expression between group, and large variance within groups
RNASeq qPCR edgeR DESeq RNASeq qPCR edgeR DESeq
updated 13.2 years ago by ★ 6.0k • written 13.2 years ago by 50k
0
votes
0
replies
735
views
alternative CDF (Tarca, Adi)
qPCR cdf probe affy qPCR cdf probe affy
18.0 years ago raffaele calogero ▴ 500
0
votes
0
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938
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.7 years ago k. brand ▴ 420
0
votes
2
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952
views
how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 16.6 years ago by ★ 6.5k • written 16.6 years ago by ▴ 410
0
votes
1
reply
1.3k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 17.7 years ago by ▴ 360 • written 17.7 years ago by ▴ 10
0
votes
4
replies
1.2k
views
HTqPCR questions
qPCR HTqPCR qPCR HTqPCR
updated 13.3 years ago by ▴ 330 • written 13.3 years ago by ★ 2.0k
0
votes
2
replies
1.5k
views
HTqPCR : readCtData problem?
miRNA qPCR HTqPCR miRNA qPCR HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
0
votes
2
replies
1.9k
views
reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.2 years ago Guest User ★ 13k
0
votes
0
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985
views
qPCR workshops in autumn 2008
qPCR qPCR
15.7 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
3
replies
995
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
0
replies
903
views
Noch freie Workshop Plätze im Oktober 2008
qPCR qPCR
15.6 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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0
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893
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Noch freie qPCR Workshop Plätze im Oktober 2008
qPCR qPCR
15.6 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
1.2k
views
Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.5 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
1
reply
1.4k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
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1.5k
views
qPCR NEWS - December 2008
qPCR graph PROcess microRNA qPCR graph PROcess microRNA
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
3
replies
1.1k
views
Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 12.6 years ago by ▴ 300 • written 12.6 years ago by ★ 13k
0
votes
0
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1.4k
views
qPCR NEWS - February 2009
qPCR Normalization PROcess microRNA qPCR Normalization PROcess microRNA
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
969
views
New microRNA & qPCR workshop in April 2009
SNP qPCR Normalization Regression microRNA SNP qPCR Normalization Regression microRNA
15.1 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
626
views
High Throughput RTqPCR data
qPCR qPCR
14.8 years ago james perkins ▴ 300
0
votes
0
replies
947
views
PLS help: is it sound to normalized highthrouput qPCR arrays using vsn?
qPCR Normalization vsn qPCR Normalization vsn
12.1 years ago Ali Mohammadian ▴ 290
0
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0
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1.6k
views
HTqPCR
qPCR limma ddCt HTqPCR qPCR limma ddCt HTqPCR
11.7 years ago Heidi Dvinge ★ 2.0k
0
votes
0
replies
1.2k
views
qPCR 2011 Symposium Talk and Poster CALL
qPCR Genetics microRNA qPCR Genetics microRNA
13.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
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1.6k
views
qPCR event preview - April 2010
miRNA qPCR Normalization probe microRNA cycle miRNA qPCR Normalization probe microRNA
14.1 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
1.1k
views
qPCR plates containing multiple samples in HTqPCR
qPCR HTqPCR qPCR HTqPCR
14.2 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
0
replies
1.2k
views
NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
15.3 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
4
replies
1.1k
views
HTqPCR only works for 384 qPCR plates
qPCR qPCR
updated 14.1 years ago by ★ 2.0k • written 14.1 years ago by ▴ 810
0
votes
9
replies
1.5k
views
htqPCR question
miRNA qPCR limma miRNA qPCR limma
updated 14.0 years ago by ▴ 810 • written 14.0 years ago by ★ 2.0k
0
votes
12
replies
1.8k
views
htqPCR question
miRNA qPCR Normalization limma miRNA qPCR Normalization limma
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 810
0
votes
4
replies
1.5k
views
Reading in data with HTqPCR
qPCR Cancer cycle HTqPCR qPCR Cancer cycle HTqPCR
14.0 years ago • updated 13.9 years ago Heidi Dvinge ★ 2.0k
0
votes
0
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1.2k
views
Experimental design for RNA-Seq
Sequencing qPCR Cancer Sequencing qPCR Cancer
13.9 years ago Jakob Hedegaard ▴ 170
0
votes
4
replies
2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR HTqPCR qPCR HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 30
0
votes
2
replies
1.7k
views
Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 13.8 years ago by 16k • written 13.8 years ago by ▴ 30
0
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2
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1.0k
views
Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Lucia Peixoto ▴ 330
0
votes
2
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1.2k
views
Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Tobias Straub ▴ 430
0
votes
1
reply
1.3k
views
gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 13.7 years ago by ▴ 260 • written 13.7 years ago by ▴ 330
0
votes
2
replies
1.3k
views
questions concerning quantile normalization in HTqPCR
miRNA qPCR miRNA qPCR
updated 13.6 years ago by ★ 2.0k • written 13.7 years ago by ▴ 810
0
votes
1
reply
939
views
normalization usinf the delta Ct method
qPCR Normalization qPCR Normalization
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 810
0
votes
0
replies
1.2k
views
qPCR Event Calendar - autumn/winter 2010
qPCR Normalization Clustering probe microRNA qPCR Normalization Clustering probe microRNA
13.6 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
760
views
Any code for simulation of qPCR studies?
qPCR qPCR
12.2 years ago Ali Mohammadian ▴ 290
50 results • Page 1 of 1
Recent ...
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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