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updated 9.2 years ago by
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updated 13 months ago by
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written 9.3 years ago by
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updated 9.1 years ago by
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written 9.1 years ago by
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7.6 years ago • updated 7.5 years ago
wcstcyx
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Gordon Smyth
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written 10.0 years ago by
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written 6.2 years ago by
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updated 9.1 years ago by
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written 9.1 years ago by
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written 9.5 years ago by
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Gordon Smyth
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Comment: Differences in differential analysis methods for RNA-Seq
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james.zhang20
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Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
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ATpoint
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There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
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ATpoint
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4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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Yveto
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Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
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Rory Stark
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I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
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