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Showing :
stringdb
•
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0
votes
6
replies
721
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 7 weeks ago by
qianyi13
• 0 • written 10 weeks ago by
Pavel
• 0
0
votes
2
replies
346
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData
STRINGdb
DifferentialExpression
GraphAndNetwork
Network
4 months ago
Luca
• 0
2
votes
5
replies
1.0k
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 4 weeks ago by
damian.szk
▴ 80 • written 5 months ago by
Abhishek
• 0
0
votes
1
reply
299
views
Specifying evidence channels in STRINGdb
STRINGdb
stringdb
7 months ago
robynne.braun
• 0
0
votes
7
replies
1.1k
views
Cannot open URL for StringDB protein.links.v11.5/9606.protein.links.v11.5.txt.gz
STRINGdb
updated 8 months ago by
damian.szk
▴ 80 • written 8 months ago by
Furkan
• 0
0
votes
0
replies
422
views
Issues setting background in STRINGdb
STRINGdb
MSstats
10 months ago
samsiljee
• 0
2
votes
2
replies
1.1k
views
STRINGdb offline use (via input_directory argument)
STRINGdb
14 months ago
Charlotte Soneson
▴ 170
2
votes
3
replies
890
views
Potential bug in STRINGdb$get_aliases()
STRINGdb
24 months ago
AstrobioMike
• 0
1
vote
2
replies
1.0k
views
Filter proteins with known interactions from STRINGdb R package
STRINGdb
2.1 years ago
Abhishek
• 0
2
votes
4
replies
1.7k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 15 months ago by
Rodrigo
▴ 10 • written 2.2 years ago by
Jessica
▴ 10
0
votes
6
replies
2.0k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
2.3 years ago • updated 2.2 years ago
Wolfgang RAFFELSBERGER
▴ 140
2
votes
9
replies
2.1k
views
STRINGdb images very low quality?
STRINGdb
updated 2.3 years ago by
damian.szk
▴ 80 • written 2.4 years ago by
jarod
▴ 30
3
votes
4
replies
2.2k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb
R
updated 2.3 years ago by
damian.szk
▴ 80 • written 2.5 years ago by
qardessio
▴ 10
0
votes
3
replies
1.3k
views
STRINGdb : accessing all types of (sub-)scores from interactions
STRINGdb
updated 2.7 years ago by
damian.szk
▴ 80 • written 2.7 years ago by
Wolfgang RAFFELSBERGER
▴ 140
0
votes
1
reply
742
views
Error in mapping the gene names to the STRINGdb identifiers
PPI
STRINGdb
updated 2.7 years ago by
damian.szk
▴ 80 • written 2.7 years ago by
Ashish Jain
▴ 10
0
votes
0
replies
841
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R
STRINGdb
2.9 years ago
choijamts
• 0
0
votes
1
reply
1.6k
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb
Network
updated 2.9 years ago by
Kevin Blighe
★ 3.9k • written 2.9 years ago by
Saransh
• 0
1
vote
1
reply
916
views
How to find the source code of the package STRINGdb ?
STRINGdb
Bioconductor
updated 3.2 years ago by
shepherl
3.9k • written 3.2 years ago by
deepue
▴ 10
0
votes
1
reply
785
views
How can I download all supported species information table of STRINGdb V11
STRINGdb
STRING
updated 3.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.5 years ago by
Evan-GIBH
• 0
2
votes
4
replies
1.5k
views
Can't create STRINGdb v11 object using STRINGdb packages methods
stringdb
4.9 years ago
Moosa
• 0
0
votes
2
replies
1.2k
views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
5.1 years ago
Samuel Lee
• 0
0
votes
15
replies
2.5k
views
Is the STRINGdb server down?
STRINGdb
R
protein
updated 4.9 years ago by
zhanghongjie000
• 0 • written 5.1 years ago by
shahroze786
• 0
0
votes
1
reply
989
views
STRINGdb: enrichment function raises error
STRINGdb
stringdb
gene set enrichment analysis
software error
go
5.4 years ago
wsciekly.maciek
▴ 10
0
votes
1
reply
845
views
error with STRINGdb package to download the graph
stringdb
R
5.9 years ago
Salvo88
▴ 20
0
votes
1
reply
965
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi
stringdb
mus musculus
updated 6.1 years ago by
damian.szk
▴ 80 • written 6.1 years ago by
hkarakurt
▴ 20
0
votes
4
replies
1.4k
views
problem with get_link function
STRINGdb
get_link
bug
6.3 years ago
cristinapasi
• 0
0
votes
0
replies
1.0k
views
Problem with link generated with R using the string_db$get_link
stringdb
7.0 years ago
Ilario De Toma
▴ 10
0
votes
3
replies
2.4k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 7.0 years ago by
Gregor Rot
▴ 10 • written 7.0 years ago by
mwinerip
• 0
1
vote
2
replies
1.3k
views
string-db.org link not working in generated graphic
STRINGdb
7.4 years ago • updated 7.3 years ago
florian.reisinger
• 0
0
votes
1
reply
1.4k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb
error
7.6 years ago
Lluís Revilla Sancho
▴ 730
1
vote
2
replies
1.8k
views
How to export a STRINGDB network to XML
STRINGdb
updated 9.0 years ago by
atariw
▴ 10 • written 9.0 years ago by
Aditya
▴ 160
31 results • Page
1 of 1
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Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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