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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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2.5 years ago Maria Doyle ▴ 100
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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2.5 years ago Maria Doyle ▴ 100
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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2.5 years ago Maria Doyle ▴ 100
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News: BioCAsia, 5-6th December 2019, Sydney, Australia
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News: BioCAsia, 29-30th November 2018, Melbourne, Australia
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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7.8 years ago mnchoi67 ▴ 40
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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7.8 years ago mnchoi67 ▴ 40
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News: Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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9.7 years ago Martin Morgan 25k
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Help with neuroblastoma working group
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Job: Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
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10.7 years ago Wolfgang Huber ★ 13k
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News: NGS data analysis training courses at EMBL-EBI
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10.8 years ago gr231 ▴ 10
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Beginner's guide to DESeq2 pdf link broken
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updated 11.0 years ago by 43k • written 11.0 years ago by • 0
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News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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11.1 years ago Thomas Girke ★ 1.7k
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Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts by empty_mt • 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions by Michael Love 43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Votes
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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