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News:
Bioconductor Course, Kenya 2025: Applications Open!
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Bioconductor
11 months ago
Maria Doyle
▴ 110
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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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2.7 years ago
Maria Doyle
▴ 110
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Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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2.7 years ago
Maria Doyle
▴ 110
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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2.7 years ago
Maria Doyle
▴ 110
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BioCAsia, 5-6th December 2019, Sydney, Australia
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6.6 years ago
Peter Hickey
▴ 760
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News:
BioCAsia, 29-30th November 2018, Melbourne, Australia
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updated 7.1 years ago by
Gordon Smyth
53k • written 7.4 years ago by
Steve Pederson
▴ 170
2
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LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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msstats
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8.0 years ago
mnchoi67
▴ 40
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May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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proteomics
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8.0 years ago
mnchoi67
▴ 40
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Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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9.9 years ago
Martin Morgan
25k
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Help with neuroblastoma working group
Training
updated 10.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.4 years ago by
paul.mineau
▴ 10
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Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
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10.9 years ago
Wolfgang Huber
★ 13k
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NGS data analysis training courses at EMBL-EBI
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11.0 years ago
gr231
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3
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Beginner's guide to DESeq2 pdf link broken
deseq2
training
updated 11.2 years ago by
Michael Love
43k • written 11.3 years ago by
sunshinne
• 0
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News:
Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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11.3 years ago
Thomas Girke
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Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
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A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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