Bioconductor Update

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783

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Versions Update BindingSiteFinder

updated 2.2 years ago by Mike Smith ★ 6.6k • written 2.2 years ago by M.Klostermann • 0

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1.7k

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update Omixer maintainer

updated 4.3 years ago by shepherl 4.1k • written 4.3 years ago by l.j.sinke • 0

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1.7k

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software error packages update

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by bs14ab • 0

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3.6k

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biocmanager valid update packages

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by bs14ab • 0

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878

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update new release version

5.5 years ago zzrickli • 0

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2.6k

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biocLite update all default ask

updated 6.1 years ago by Fischer-philipp ▴ 30 • written 6.1 years ago by rgiannico ▴ 10

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1.4k

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PANTHER.db update annotation go

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by alfonsosaera • 0

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965

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support.bioconductor.org update News

6.2 years ago shepherl 4.1k

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1.0k

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bioclite package installation update

8.0 years ago Malcolm Cook ★ 1.6k

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2.2k

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installation update

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by debg • 0

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7.3k

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bioconductor biocupgrade upgrade update bioclite

8.9 years ago enricoferrero ▴ 680

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6.9k

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deseq2 update

10.2 years ago zshao1 • 0

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5.8k

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update bioclite

updated 10.4 years ago by Dan Tenenbaum ★ 8.2k • written 10.4 years ago by dianmante • 0

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1.8k

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experimentdata update

updated 10.5 years ago by Laurent Gatto 1.6k • written 10.5 years ago by paul.theodor.pyl ▴ 10

14 results • Page 1 of 1

Recent ...

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Comment: Using tximport for kallisto aligned TOIL data by Nicholas • 0

Great, thanks. I have the transcriptome version and the corresponding GTF file for the ENSEMBL transcriptome version. Is there a way to do …

Answer: affy::rma results doesn't match with ncbi website by James W. MacDonald 68k

Please note that RMA is a method intended to normalize and summarize a set of samples rather than a single sample (it doesn't make much sen…

Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by shepherl 4.1k

Can you try `BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene", type="source")`

Comment: Limma - Complex 2-way multi-level contrast with paired samples by Elizabeth • 0

Thank you very much, James! I wasn't aware of voomLmFit, and using it gave me more logical DEG. I really appreciate your time and effort!

Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k

Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…

Votes

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Awards • All

Scholar to Michael Love 43k

Scholar to James W. MacDonald 68k

Popular Question to Wolfgang RAFFELSBERGER ▴ 140