Bioconductor Update

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702

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Versions Update BindingSiteFinder

updated 22 months ago by Mike Smith ★ 6.6k • written 22 months ago by M.Klostermann • 0

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1.5k

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update Omixer maintainer

updated 4.0 years ago by shepherl 4.1k • written 4.0 years ago by l.j.sinke • 0

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1.6k

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software error packages update

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by bs14ab • 0

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3.4k

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biocmanager valid update packages

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by bs14ab • 0

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809

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update new release version

5.2 years ago zzrickli • 0

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2.4k

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biocLite update all default ask

updated 5.8 years ago by Fischer-philipp ▴ 30 • written 5.8 years ago by rgiannico ▴ 10

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1.3k

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PANTHER.db update annotation go

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by alfonsosaera • 0

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922

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support.bioconductor.org update News

5.9 years ago shepherl 4.1k

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986

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bioclite package installation update

7.7 years ago Malcolm Cook ★ 1.6k

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2.1k

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installation update

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by debg • 0

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7.2k

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bioconductor biocupgrade upgrade update bioclite

8.5 years ago enricoferrero ▴ 660

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6.8k

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deseq2 update

9.9 years ago zshao1 • 0

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5.7k

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update bioclite

updated 10.1 years ago by Dan Tenenbaum ★ 8.2k • written 10.1 years ago by dianmante • 0

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1.7k

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experimentdata update

updated 10.2 years ago by Laurent Gatto 1.6k • written 10.2 years ago by paul.theodor.pyl ▴ 10

14 results • Page 1 of 1

Recent ...

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20