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Improving the design matrices vignette in RNAseq123
RNAseq123
updated 8 days ago by 50k • written 12 days ago by ▴ 730
0
votes
2
replies
344
views
bug in block.plsda from mixOmics?
mixOmics
7 months ago Lluís Revilla Sancho ▴ 730
0
votes
0
replies
314
views
mixOmics with Bioconductor classes
mixOmics
7 months ago Lluís Revilla Sancho ▴ 730
1
vote
2
replies
495
views
Where do the filename come from in the LOLA datasets?
LOLA
12 months ago • updated 9 months ago Lluís Revilla Sancho ▴ 730
0
votes
2
replies
825
views
runPCA in a SingleCellExperiment results ina colMeans error
scran SingleCellExperiment
10 months ago Lluís Revilla Sancho ▴ 730
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2 scRNAseq scran
11 months ago • updated 10 months ago Lluís Revilla Sancho ▴ 730
0
votes
1
reply
621
views
Error printing a CompressedGRangesList
GenomicRanges
16 months ago • updated 14 months ago Lluís Revilla Sancho ▴ 730
0
votes
2
replies
673
views
microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
16 months ago • updated 15 months ago Lluís Revilla Sancho ▴ 730
0
votes
0
replies
589
views
Identify accepted columns in TxDb objects
TxDb
16 months ago Lluís Revilla Sancho ▴ 730
0
votes
0
replies
500
views
Filtering references to a taxa
brendaDb
21 months ago Lluís Revilla Sancho ▴ 730
0
votes
2
replies
908
views
layout has more positions than samples but omixerRand doesn't randomize the samples
Omixer
3.1 years ago • updated 23 months ago Lluís Revilla Sancho ▴ 730
0
votes
0
replies
596
views
Missing sample
OSAT
3.1 years ago Lluís Revilla Sancho ▴ 730
3
votes
2
replies
845
views
Multi-level comparisons with paired data: duplicateCorrelation or not?
limma
3.1 years ago Lluís Revilla Sancho ▴ 730
0
votes
0
replies
844
views
enrichPathway error when checking condition lengths used
DOSE ReactomePA
3.2 years ago Lluís Revilla Sancho ▴ 730
0
votes
1
reply
704
views
Model behind mcia
ade4 omicade4
3.5 years ago Lluís Revilla Sancho ▴ 730
3
votes
4
replies
1.6k
views
Different geneset same p-values in topGO
topgo bug
7.3 years ago • updated 3.6 years ago Lluís Revilla Sancho ▴ 730
1
vote
6
replies
1.5k
views
Relations between average expression and fold change
design AveExpr comparisons
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 730
2
votes
1
reply
1.3k
views
Downloading a private GEO with GEOquery
GEOquery
updated 4.6 years ago by 21k • written 4.6 years ago by ▴ 730
1
vote
3
replies
2.4k
views
Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.9 years ago • updated 4.8 years ago Lluís Revilla Sancho ▴ 730
1
vote
5
replies
1.3k
views
Error in sizeRestrictedClusterMerge: replace is not a multiple of replacement length
wgcna
updated 5.0 years ago by ★ 3.0k • written 5.0 years ago by ▴ 730
3
votes
2
replies
1.2k
views
Error installing graphite
graphite
updated 5.5 years ago by ▴ 100 • written 5.5 years ago by ▴ 730
0
votes
0
replies
648
views
Error setting up a sample in OSAT
osat
5.8 years ago Lluís Revilla Sancho ▴ 730
0
votes
3
replies
1.4k
views
How to create the colData for a complex experiment
multiassayexperiment colData
updated 6.4 years ago by ★ 1.1k • written 6.4 years ago by ▴ 730
0
votes
2
replies
829
views
STATegRa Minimum number of samples
stategra
6.4 years ago Lluís Revilla Sancho ▴ 730
0
votes
0
replies
730
views
STATegRa::omicsCompAnalysis invalid 'ncol' value
STATegRa
6.5 years ago Lluís Revilla Sancho ▴ 730
0
votes
1
reply
1.1k
views
Retrieve the reactome ID of a protein
reactome.db
updated 6.8 years ago by ▴ 260 • written 6.8 years ago by ▴ 730
5
votes
3
replies
1.5k
views
Using BiocStyle with plotly
biocstyle plotly ggplot2
updated 6.8 years ago by ▴ 750 • written 6.8 years ago by ▴ 730
0
votes
0
replies
893
views
Testing a gene set with globaltest
globaltest
6.9 years ago Lluís Revilla Sancho ▴ 730
3
votes
7
replies
2.1k
views
Misleading information in reactome.db
reactome.db
7.2 years ago Lluís Revilla Sancho ▴ 730
0
votes
7
replies
2.0k
views
Statistic for GSA
gsea concept gsa
updated 7.2 years ago by ▴ 190 • written 7.3 years ago by ▴ 730
1
vote
1
reply
1.3k
views
Unable to see reactome.db dbschema
reactome.db rsqlite
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ▴ 730
2
votes
2
replies
1.2k
views
Using GeneSetCollection objects of GSEABase in piano package
piano gseabase
7.3 years ago Lluís Revilla Sancho ▴ 730
0
votes
4
replies
936
views
Surrogate variables affecting just one sample?
sva
updated 7.3 years ago by ▴ 650 • written 7.3 years ago by ▴ 730
3
votes
5
replies
1.7k
views
Selecting few ids from reactome.db
annotationdbi reactome.db bug
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 730
2
votes
9
replies
4.0k
views
Unable to calculate in parallel what can be calculated on a for loop
biocparallel foreach org.hs.eg.db gostats
updated 7.4 years ago by 25k • written 7.5 years ago by ▴ 730
0
votes
0
replies
638
views
Which is the PANR input data?
panr
7.6 years ago Lluís Revilla Sancho ▴ 730
0
votes
1
reply
1.4k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb error
7.6 years ago Lluís Revilla Sancho ▴ 730
1
vote
2
replies
2.4k
views
Using WGCNA egiengenes for modules in correlated networks
wgcna
updated 7.6 years ago by ★ 3.0k • written 7.6 years ago by ▴ 730
0
votes
0
replies
670
views
How to use combineResults from topGO package?
topGO topgo
7.6 years ago Lluís Revilla Sancho ▴ 730
2
votes
1
reply
1.2k
views
Is possible to use an organism annotation package in simLL function?
gostats
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 730
1
vote
3
replies
1.8k
views
WGCNA clustering configuration
clustering wgcna microarray
updated 8.0 years ago by ★ 3.0k • written 8.0 years ago by ▴ 730
2
votes
5
replies
1.6k
views
Download the stats of Bioconductor
bioconductor stats
9.3 years ago Lluís Revilla Sancho ▴ 730
42 results • Page 1 of 1
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