0
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1
reply
266
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[DESeq2] Changing dispersion estimates between runs of DESeq2
DESeq2
3 months ago • updated 11 days ago colinmccornack • 0
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3
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230
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APAlyzer
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2
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2
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360
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3 months ago jamie.gearing ▴ 60
0
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2
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362
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Bioconductor
updated 3 months ago by ★ 4.1k • written 3 months ago by ▴ 600
1
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2
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517
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Error installing Seqinfo
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1
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0
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176
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News: Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
3 months ago Maria Doyle ▴ 110
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4
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364
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Getting a large intercept with DESeq2
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3 months ago Denise • 0
2
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2
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351
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limpa
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0
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1
reply
193
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Add additional maintainer for MOFA2
MOFA2
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1
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3
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847
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gene Set with high AUC score but no cells assigned to cell type
AUCell
5 months ago • updated 3 months ago gogeni5529 • 0
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2
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417
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featureCounts -L: high unassigned:mapq fraction
Bioconductor
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1
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2
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569
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updated 3 months ago by ★ 4.0k • written 4 months ago by • 0
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2
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553
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incomplete imputation of missing values with LEA impute() function
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updated 3 months ago by ★ 4.0k • written 4 months ago by • 0
5
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3
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753
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Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors biomaRt Seqinfo
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2
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2
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705
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What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
4 months ago • updated 3 months ago Matthew Thornton ▴ 390
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2
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237
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VariantAnnotation not does escape = within header string quotes
VariantAnnotation
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428
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Setting up a DESeq2 Design with Paired Data
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2
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3 months ago Steve Lianoglou ★ 13k
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Bioconductor
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1
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4
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510
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"Watched Tags" are being erased rather than updated
Bioconductor
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0
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1
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287
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Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 3 months ago by 43k • written 4 months ago by • 0
1
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2
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438
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Can limma be used with module eigengenes instead of genes?
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0
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7
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0
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3 months ago residentialplayt 0
2
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940
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Conference
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0
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1
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651
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Bioconductor
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1
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225
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bake() and cool() resulting in an empty table
dar
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3
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314
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Using DESeq2 for age prediction
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4
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3
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"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
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4 months ago ubjw24 • 0
0
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3
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541
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4 months ago Gabriel • 0
0
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1
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221
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Gatins Set error
flowCore Bioconductor
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1
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311
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0
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290
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11
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0
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2
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Help with defining groups
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1
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2
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5 months ago • updated 4 months ago ksankaran • 0
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updated 3 months ago by 43k • written 5 months ago by • 0
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3
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updated 4 months ago by ★ 29k • written 5 months ago by ▴ 600
0
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problem for finding soft power for constructing network in WGCNA algorithm
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0
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6
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5 months ago Best Rehab Center 0
2
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replace cat with message in glmTreat when lfc = 0
edgeR glmTreat
updated 5 months ago by 53k • written 5 months ago by • 0
0
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1
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258
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Job: Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
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0
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Differential motif analysis
motifmatchr
updated 5 months ago by 68k • written 5 months ago by ▴ 30
46,776 results • Page 4 of 936
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
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