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233
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NUPOP usage
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PTM analysis in LIMPA
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Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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Question about DESeq2 Design for Paired Treatment Study
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441
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News: EuroBioC2026 abstract submission is open!
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PFAM formats changed - is it still possible to use this with ISA?
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DECIPHER DesignProbes unable to design FISH-probes
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p.adjust BH Question
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4
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578
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Large logFC but somewhat high FDR
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3 months ago • updated 11 weeks ago JKim • 0
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Job: Bioinformatician at the Lausanne University Hospital
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upstream git branches of bioc-release
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limpa - drivers for unusually high standard error?
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How can I correctly use phyloseq with Docker?
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Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
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Install old version of DESeq2
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497
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Guidance Requested on GCN Network Analysis and Module Enrichment in R
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ORFik: spliced 5utr regions
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BiocManager::install() doesn't work
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Results with PON give more variants
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Empty boxes in treemap plot rrvgo package
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CRISPRSeek Question: changing weight and gRNA.size causes error
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375
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sigDF object in sesame
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475
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11
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Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
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GenomicRanges
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0
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439
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0
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369
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mzR-Rcpp compiler version issue
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updated 3 months ago by 1.6k • written 6 months ago by • 0
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612
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Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single Cell RNA Sequencing
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updated 3 months ago by ★ 4.0k • written 3 months ago by • 0
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0
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403
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Corrupted SQLite while trying to install PANTHER.db?
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0
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1
reply
517
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org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
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0
votes
1
reply
400
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Length of 'dimnames' [1] not equal to array extent
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updated 3 months ago by ★ 4.0k • written 5 months ago by • 0
0
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1
reply
449
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Extract snp information from genomic regions with biomaRt -> "oaries_snp"
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0
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2
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407
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3-factor DESeq2 trime-series analysis
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0
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338
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Questions about pseudo counts from RUVSeq
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0
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0
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Problem with viewGO(ref_path) in SpliceWiz
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updated 3 months ago by ★ 4.0k • written 5 months ago by • 0
0
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1
reply
426
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GOseq Probability Weight Function bad fit
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46,776 results • Page 3 of 936
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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