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18.9 years ago Anthony Bosco ▴ 500
2
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SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
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4.5 years ago rmash ▴ 20
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21.8 years ago Laurent Gautier ★ 2.3k
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3.4 years ago Miguel.Cosenza ▴ 10
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4.1 years ago jwilliamblamer • 0
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16.2 years ago Vincent J. Carey, Jr. 6.7k
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3.6 years ago ahua217 ▴ 10
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2.3 years ago sara • 0
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14.8 years ago Michal Blazejczyk ▴ 320
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10.3 years ago Guest User ★ 13k
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13.5 years ago Gordon Smyth 50k
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5.1 years ago gens8094 • 0
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3.3 years ago ahsindoomilup • 0
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9.1 years ago gen ▴ 30
0
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1
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2
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9.1 years ago melanie.shook • 0
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0
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895
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How to run a CDHIT command of "BioSeqClass" package on DNAStringSet object of DNA sequences to get non-redundent set of sequences?
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6.8 years ago vinod.acear ▴ 50
0
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0
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diffbind dba.report
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22 months ago jonathanho1989 • 0
1,000 results • Page 1 of 20
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Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result by ATpoint ★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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