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BiocCheck
•
reset
0
votes
12
replies
1.1k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
4.9 years ago
waterincan
• 0
2
votes
10
replies
2.4k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 19 months ago by
Marek Gierlinski
▴ 30 • written 7.5 years ago by
david.a.quigley
• 0
4
votes
6
replies
4.3k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 5.9 years ago by
shepherl
3.9k • written 5.9 years ago by
xyluo1991
• 0
2
votes
5
replies
1.9k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 5.9 years ago by
Marcel Ramos
690 • written 8.0 years ago by
richierocks
▴ 40
6
votes
3
replies
2.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.5 years ago by
Paul Brennan
▴ 10
1
vote
3
replies
1.8k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.2 years ago by
Dan Tenenbaum
★ 8.2k • written 8.2 years ago by
liz.ingsimmons
▴ 140
0
votes
2
replies
713
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.1 years ago by
shepherl
3.9k • written 3.1 years ago by
wewolski
▴ 10
1
vote
2
replies
1.3k
views
BiocCheck path escape issue
bioccheck
bug
7.0 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
881
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
ihnatova
• 0
0
votes
2
replies
917
views
BiocCheck package size
BiocCheck
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
zhang.jianhai
▴ 10
7
votes
2
replies
1.2k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 2.6 years ago by
ZheFrench
▴ 50
0
votes
2
replies
929
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.0 years ago • updated 2.9 years ago
ullrich
▴ 20
5
votes
2
replies
952
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 2.5 years ago by
Steve Lianoglou
★ 13k • written 2.5 years ago by
pouryany
• 0
1
vote
2
replies
1.9k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.8 years ago
j.flesch
▴ 10
0
votes
2
replies
1.5k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.4 years ago
Hector
• 0
0
votes
1
reply
1.3k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
6.5 years ago
Paul Brennan
▴ 10
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.1 years ago
kmezhoud
▴ 10
0
votes
1
reply
856
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
zhezhenwang
• 0
18 results • Page
1 of 1
Recent ...
Replies
Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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