Showing : DEGs • reset
5
votes
2
replies
25k
views
DESeq2: thousands of NA for pvalues?
deseq2 rna-seq DEGs cooks cutoff
written 5.9 years ago by ▴ 30
0
votes
3
replies
802
views
code syntax for DESeq2 to derive DEGs from a complicated contrast or interaction contrast?
DESeq2 Complicated.contrast DEGs
updated 2.2 years ago by 42k • written 2.2 years ago by • -60
-6
votes
4
replies
987
views
is it possible and reasonable for edgeR to derive DEGs from a complicated contrast or contrast of contrast?
complicated.contrast edgeR DEGs
2.2 years ago Mike • -60
2
votes
3
replies
1.1k
views
Classic or GLM approach in edgeR, Why do I got less DEG in GLM approach?
edgeR DEGs
updated 2.7 years ago by 51k • written 2.7 years ago by • 0
0
votes
2
replies
990
views
Extend comparisons between two groups to more groups in DESEQ2
edgeR DEGs DESEQ2 RNASeqData
2.8 years ago Raito92 ▴ 60
0
votes
3
replies
1.2k
views
EdgeR question: why I got discrepancy results for DEGs when using different ways setting up the models
RNAseq edgeR DEGs
updated 2.7 years ago by 51k • written 3.3 years ago by ▴ 380
0
votes
20
replies
2.9k
views
DESeq2 question: why I got discrepancy results for DEGs when using different ways setting up the models
DESeq2 DEGs
3.4 years ago • updated 3.3 years ago Ming ▴ 380
2
votes
1
reply
7.0k
views
EnhancedVolcano Label Question
RNASeq EnhancedVolcano DEGs
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
0
votes
2
replies
1.2k
views
Deseq2 cooks filter for 2 replicates x 3 replicates
DESeq2 Nullcook'svalues 2x3 DEGs
3.7 years ago andreia ▴ 10
4
votes
5
replies
1.6k
views
DEseq2 results
heatmaps DEGs PCA
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
2
votes
2
replies
1.2k
views
Design formula for pairwise comparison of experimental setup with multiple factors
DEGs DESeq2
3.9 years ago 2021yearsold • 0
0
votes
1
reply
983
views
mircomb analysis from deg's list
mircomb mrna mirna degs interaction
4.4 years ago andreia ▴ 10
0
votes
2
replies
945
views
mirna-mrna interation mircomb (from DEGs and DEMs lists)
deseq2 mircomb degs dems
updated 4.4 years ago by 42k • written 4.4 years ago by ▴ 10
0
votes
1
reply
1.0k
views
compareCluster error: On clusterProfiler DEGs enrichments analysis
clusterProfiler Bioconductor R DEGs
4.4 years ago tpm • 0
3
votes
2
replies
2.9k
views
How to deal with elimination of genes when using filterByExpr function?
edger DEGs normalization
updated 4.8 years ago by 51k • written 4.8 years ago by ▴ 10
2
votes
4
replies
1.2k
views
How to make grouping and contrast for multfactor design?
edger DEGs
4.9 years ago anikng ▴ 10
2
votes
3
replies
1.2k
views
How to correctly set up the design in DESeq2 for RRPP?
deseq2 rrpp DEGs RNAseq
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
0
votes
2
replies
4.5k
views
Heatmap of selected genes
heatmap DEGs RNAseq DESeq2
updated 5.3 years ago by ▴ 280 • written 5.3 years ago by • 0
4
votes
3
replies
1.3k
views
Differential profile for only one normal - tumor pair
edger degs paired design
updated 6.4 years ago by 51k • written 6.4 years ago by ▴ 10
3
votes
5
replies
2.3k
views
DEGs of microarray Data and hierarchical clustering and visualizing using heatmap
limma heatmap DEGs
updated 6.8 years ago by 51k • written 6.8 years ago by ▴ 30
3
votes
1
reply
1.2k
views
Common dispersion value using edgeR for DEGs analysis
edgeR DEGS common disperion
updated 7.3 years ago by ★ 28k • written 7.3 years ago by • 0
6
votes
4
replies
3.0k
views
Identification of DEGs through limma analysis
limma microarray DEGs p values lfc
7.4 years ago rkp • 0
22 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
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Scholar to James W. MacDonald 67k
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