Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DNAMethylation
•
reset
0
votes
7
replies
255
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
9 days ago • updated 3 days ago
hortense96
• 0
0
votes
6
replies
311
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 15 days ago by
Tim Peters
▴ 170 • written 24 days ago by
s.malik
• 0
0
votes
0
replies
79
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
22 days ago
Macsue
• 0
0
votes
1
reply
173
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 5 weeks ago by
Simon Pearce
• 0 • written 11 weeks ago by
User3088
• 0
0
votes
1
reply
239
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 7 weeks ago by
belinda.phipson
▴ 40 • written 7 weeks ago by
s.malik
• 0
3
votes
5
replies
2.1k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 9 weeks ago by
sup0903
• 0 • written 3.4 years ago by
Hongbii
• 0
0
votes
4
replies
385
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 9 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
rae.alshammari
▴ 10
1
vote
4
replies
386
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 10 weeks ago by
Gordon Smyth
50k • written 11 weeks ago by
Jitendra
▴ 10
1
vote
4
replies
443
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
11 weeks ago
mikat
• 0
0
votes
1
reply
486
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
12 months ago
Grace
• 0
2
votes
6
replies
1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 12 months ago by
Tim Peters
▴ 170 • written 12 months ago by
Grace
• 0
2
votes
6
replies
932
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 13 months ago by
belinda.phipson
▴ 40 • written 13 months ago by
Joana
• 0
0
votes
0
replies
535
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
20 months ago
calen.p.ryan
• 0
3
votes
8
replies
1.4k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
2.8 years ago
rtrivedi1
▴ 10
14 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards
• All
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Locations
• All
United States,
7 minutes ago
France,
12 minutes ago
Belgium,
12 minutes ago
United Kingdom,
14 minutes ago
Ireland,
19 minutes ago
Traffic: 1001 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6