Showing : DNAseq • reset
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Using DESeq2 for Analyzing AMR Gene Variations in Water Samples Post-Treatment
DESeq2 NanoporeRNASeq DNASeq
updated 3 months ago by 42k • written 3 months ago by • 0
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785
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Compare DNA sequence pairs and compute lengths and coordinates
DNASeq CNEr
2.9 years ago Md Abrar • 0
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4
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3.7k
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transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
3.2 years ago HELEN • 0
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881
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Job: Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq RNASeq SingleCell
3.3 years ago camp ▴ 10
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751
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
3.4 years ago koushik • 0
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1.1k
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Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
6.3 years ago Cased • 0
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3
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1.7k
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Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.4 years ago by ▴ 540 • written 6.4 years ago by • 0
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1
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1.2k
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How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq pathway analysis protein biomarkers
6.8 years ago emadelhewihy • 0
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1
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1.4k
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why merged paired end reads still have strand infomation?
dnaseq rtracklayer paired-end reads
7.4 years ago zwfanwz678 • 0
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1.2k
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Centipede foot printing export
footprinting centipede atac-seq dnaseq
7.7 years ago rbronste ▴ 60
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1.4k
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any ideas on a workflow for exome seq data analysis with R?
exome dnaseq WES
8.4 years ago arvand.akbari • 0
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2.0k
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Job: Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job jobs rnaseq chipseq dnaseq Job
9.2 years ago Rory Stark ★ 5.2k
3
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2
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1.5k
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Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings subsetting View dnastring dnaseq
updated 9.2 years ago by 67k • written 9.2 years ago by • 0
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1.6k
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Newbie - Adding Labels to Individual Genes with ggbio?
r ggbio ggplot2 dnaseq genomicranges
updated 9.4 years ago by ▴ 130 • written 9.4 years ago by • 0
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6.6k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.5 years ago by 51k • written 9.5 years ago by ▴ 140
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8
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9.2k
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DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2 dnaseq
updated 10.2 years ago by 42k • written 10.2 years ago by ▴ 100
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1.6k
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Bioconductor Employment: Statistical Research Associate
DNASeq Cancer DNASeq Cancer
13.0 years ago Martin Morgan 25k
17 results • Page 1 of 1
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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Scholar to Gordon Smyth 51k
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Scholar to James W. MacDonald 67k
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