Bioconductor Filter

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filter deseq2

updated 13 months ago by Michael Love 42k • written 13 months ago by PD • 0

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919

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R filter limma Normalization Microarray

13 months ago Abdul ▴ 20

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563

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filter gate_quad_tmix gt_gating

2.2 years ago • updated 2.1 years ago Pierre • 0

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702

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flowCore openCyto Summary Result Filter

updated 4.1 years ago by Jake Wagner ▴ 310 • written 4.2 years ago by noviello • 0

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RNA WGCNA filter

4.9 years ago modarzi ▴ 10

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788

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filter deseq2

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by charles.foster ▴ 160

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1.1k

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rtracklayer gff filter

updated 5.3 years ago by Michael Lawrence ★ 11k • written 5.3 years ago by alslonik • 0

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1.8k

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deseq2 filter genefilter

updated 6.5 years ago by Michael Love 42k • written 6.6 years ago by Björn • 0

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3.8k

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loop filter

written 6.5 years ago by kritikamish99 ▴ 10

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3.2k

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DGElist filter edgeR

updated 6.9 years ago by Gordon Smyth 50k • written 6.9 years ago by alakatos ▴ 130

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1.3k

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limma filter genelist differential gene expression

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by bi_Scholar • 0

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missing data filter

updated 8.5 years ago by James W. MacDonald 66k • written 8.5 years ago by rgescudero • 0

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1.3k

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flowcore gate subsetting filter

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

9.2 years ago alakatos ▴ 130

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3.5k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.3 years ago by James W. MacDonald 66k • written 9.3 years ago by svlachavas ▴ 830

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3.1k

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deseq filter reads

9.4 years ago ccheung • 0

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1.3k

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variantannotation vcf fixed filter

9.4 years ago Anna N. • 0

17 results • Page 1 of 1

Recent ...

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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k

I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…

Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k

After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…

Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k

Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…

Comment: GSVA function by Robert Castelo ★ 3.3k

No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …

Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0

Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840

Votes

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

A: DiffBind Batch Effect

C: DiffBind Batch Effect

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Popular Question to Robert Castelo ★ 3.3k