Bioconductor Genesis

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GENESIS

18 months ago SuperDad • 0

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775

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GENESIS

22 months ago Stephanie M. Gogarten ▴ 890

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GENESIS GWASTools GDSfile

updated 2.0 years ago by Stephanie M. Gogarten ▴ 890 • written 2.0 years ago by Mindy wang • 0

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GENESIS SeqVarTools

updated 2.1 years ago by Stephanie M. Gogarten ▴ 890 • written 2.1 years ago by pjuge • 0

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GENESIS autosome-only=FALSE? PCAir

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by gabry.scata ▴ 10

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GENESIS admixMap

2.1 years ago mailtoshivam13 • 0

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1.5k

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GENESIS

updated 2.4 years ago by Stephanie M. Gogarten ▴ 890 • written 2.5 years ago by SuperDad • 0

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706

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assocTestSingle GENESIS

written 2.8 years ago by SuperD • 0

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kingToMatrix GENESIS Plants

3.1 years ago Monica • 0

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gwas genesis p-value q-q-plot

updated 4.8 years ago by Anna • 0 • written 6.0 years ago by solanum • 0

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1.3k

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GENESIS

5.0 years ago Stephanie M. Gogarten ▴ 890

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1.1k

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GENESIS

5.1 years ago Stephanie M. Gogarten ▴ 890

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2.2k

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genesis effect allele association analysis

updated 5.3 years ago by Stephanie M. Gogarten ▴ 890 • written 5.3 years ago by ucbtapc • 0

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genesis gwastools

5.4 years ago Stephanie M. Gogarten ▴ 890

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genesis

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.4 years ago by o.giannakopoulou • 0

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genesis gds SeqVarData

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by JT • 0

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Genesis

5.8 years ago alipka ▴ 10

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1.1k

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GENESIS

updated 5.8 years ago by Stephanie M. Gogarten ▴ 890 • written 5.9 years ago by lassana.a.samarakoon ▴ 10

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rna-seq tmixclust k-means clustering gene expression genesis

6.0 years ago astridite • 0

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genesis

6.1 years ago Stephanie M. Gogarten ▴ 890

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GENESIS

6.1 years ago Corey.Cox • 0

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GENESIS zscore wald

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by lassana.a.samarakoon ▴ 10

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genesis output score

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by lassana.a.samarakoon ▴ 10

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1.6k

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genesis admixmap

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by GENOMIC_region • 0

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Genesis Installation

updated 6.3 years ago by Mike Smith ★ 6.6k • written 6.3 years ago by winstondunnmd ▴ 10

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genesis fitnullmodel gwas ascertainment

updated 6.4 years ago by mconomos ▴ 70 • written 6.4 years ago by ferranpauls10 • 0

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3.7k

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genesis admixmap

updated 6.6 years ago by Stephanie M. Gogarten ▴ 890 • written 6.6 years ago by GENOMIC_region • 0

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1.3k

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genesis

6.7 years ago Stephanie M. Gogarten ▴ 890

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genesis pcrelate gds

updated 6.8 years ago by Stephanie M. Gogarten ▴ 890 • written 6.8 years ago by o.giannakopoulou • 0

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genesis gwastools seqarray

7.2 years ago • updated 6.8 years ago Stephanie M. Gogarten ▴ 890

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1.4k

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GENESIS GWAS resampling resample statistics

6.8 years ago naglemi ▴ 10

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1.4k

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GENESIS GWAS AssocTestMM

updated 7.0 years ago by mconomos ▴ 70 • written 7.0 years ago by naglemi ▴ 10

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1.4k

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genesis pcrrelate gds

updated 7.1 years ago by Stephanie M. Gogarten ▴ 890 • written 7.1 years ago by roll • 0

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1.3k

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genesis snprelate

7.2 years ago Stephanie M. Gogarten ▴ 890

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1.5k

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GENESIS GWAS GDS

updated 7.2 years ago by zhengx ▴ 30 • written 7.2 years ago by naglemi ▴ 10

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1.1k

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genesis

7.3 years ago Stephanie M. Gogarten ▴ 890

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1.7k

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GENESIS assoctestmm GWAS

updated 7.4 years ago by mconomos ▴ 70 • written 7.4 years ago by naglemi ▴ 10

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LMM GWAS GENESIS assocTestMM

updated 7.4 years ago by mconomos ▴ 70 • written 7.4 years ago by naglemi ▴ 10

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2.3k

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genesis pcair

7.6 years ago GENOMIC_region • 0

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2.5k

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genesis

7.6 years ago Stephanie M. Gogarten ▴ 890

40 results • Page 1 of 1

Recent ...

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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130