Bioconductor Genesis

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GENESIS

10 months ago SuperDad • 0

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591

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GENESIS

13 months ago Stephanie M. Gogarten ▴ 890

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901

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GENESIS GWASTools GDSfile

updated 15 months ago by Stephanie M. Gogarten ▴ 890 • written 15 months ago by Mindy wang • 0

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GENESIS SeqVarTools

updated 16 months ago by Stephanie M. Gogarten ▴ 890 • written 16 months ago by pjuge • 0

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GENESIS autosome-only=FALSE? PCAir

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by gabry.scata ▴ 10

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GENESIS admixMap

17 months ago mailtoshivam13 • 0

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GENESIS

updated 21 months ago by Stephanie M. Gogarten ▴ 890 • written 21 months ago by SuperDad • 0

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assocTestSingle GENESIS

written 2.1 years ago by SuperD • 0

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kingToMatrix GENESIS Plants

2.4 years ago Monica • 0

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gwas genesis p-value q-q-plot

updated 4.1 years ago by Anna • 0 • written 5.3 years ago by solanum • 0

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GENESIS

4.3 years ago Stephanie M. Gogarten ▴ 890

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892

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GENESIS

4.4 years ago Stephanie M. Gogarten ▴ 890

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1.9k

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genesis effect allele association analysis

updated 4.6 years ago by Stephanie M. Gogarten ▴ 890 • written 4.6 years ago by ucbtapc • 0

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genesis gwastools

4.7 years ago Stephanie M. Gogarten ▴ 890

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genesis

updated 4.7 years ago by Stephanie M. Gogarten ▴ 890 • written 4.7 years ago by o.giannakopoulou • 0

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genesis gds SeqVarData

updated 4.8 years ago by Stephanie M. Gogarten ▴ 890 • written 4.8 years ago by JT • 0

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Genesis

5.1 years ago alipka ▴ 10

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908

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GENESIS

updated 5.1 years ago by Stephanie M. Gogarten ▴ 890 • written 5.1 years ago by lassana.a.samarakoon ▴ 10

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rna-seq tmixclust k-means clustering gene expression genesis

5.3 years ago astridite • 0

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genesis

5.4 years ago Stephanie M. Gogarten ▴ 890

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GENESIS

5.4 years ago Corey.Cox • 0

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GENESIS zscore wald

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by lassana.a.samarakoon ▴ 10

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genesis output score

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by lassana.a.samarakoon ▴ 10

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1.4k

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genesis admixmap

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by GENOMIC_region • 0

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2.3k

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Genesis Installation

updated 5.6 years ago by Mike Smith ★ 6.6k • written 5.6 years ago by winstondunnmd ▴ 10

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genesis fitnullmodel gwas ascertainment

updated 5.7 years ago by mconomos ▴ 70 • written 5.7 years ago by ferranpauls10 • 0

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genesis admixmap

updated 5.9 years ago by Stephanie M. Gogarten ▴ 890 • written 5.9 years ago by GENOMIC_region • 0

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genesis

6.0 years ago Stephanie M. Gogarten ▴ 890

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2.9k

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genesis pcrelate gds

updated 6.0 years ago by Stephanie M. Gogarten ▴ 890 • written 6.0 years ago by o.giannakopoulou • 0

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genesis gwastools seqarray

6.5 years ago • updated 6.1 years ago Stephanie M. Gogarten ▴ 890

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1.2k

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GENESIS GWAS resampling resample statistics

6.1 years ago naglemi ▴ 10

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1.2k

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GENESIS GWAS AssocTestMM

updated 6.3 years ago by mconomos ▴ 70 • written 6.3 years ago by naglemi ▴ 10

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1.2k

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genesis pcrrelate gds

updated 6.4 years ago by Stephanie M. Gogarten ▴ 890 • written 6.4 years ago by roll • 0

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1.1k

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genesis snprelate

6.5 years ago Stephanie M. Gogarten ▴ 890

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1.3k

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GENESIS GWAS GDS

updated 6.5 years ago by zhengx ▴ 30 • written 6.5 years ago by naglemi ▴ 10

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991

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genesis

6.6 years ago Stephanie M. Gogarten ▴ 890

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1.5k

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GENESIS assoctestmm GWAS

updated 6.7 years ago by mconomos ▴ 70 • written 6.7 years ago by naglemi ▴ 10

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1.8k

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LMM GWAS GENESIS assocTestMM

updated 6.7 years ago by mconomos ▴ 70 • written 6.7 years ago by naglemi ▴ 10

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genesis pcair

6.9 years ago GENOMIC_region • 0

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2.2k

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genesis

6.9 years ago Stephanie M. Gogarten ▴ 890

40 results • Page 1 of 1

Recent ...

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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