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Job:
Bioconductor Core developers group opening
R
cloud
github
python
git
3.2 years ago
Vincent J. Carey, Jr.
6.7k
4
votes
2
replies
1.1k
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good-first-issue (or similar) GitHub
Culture
R
GitHub
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
BioInfoBeginnerrr
• 0
1
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2
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1.4k
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How to install R package from GitHub
Install
github
updated 3.6 years ago by
shepherl
4.2k • written 3.6 years ago by
Padam
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0
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1
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Installation of r2excel package
github
packages
updated 6.8 years ago by
Gordon Smyth
53k • written 6.8 years ago by
thkapell
▴ 10
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1
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1.6k
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flowCL - svn conversion to Github
flowCL
git-svn bridge
github
updated 7.8 years ago by
nitesh.turaga
▴ 140 • written 7.8 years ago by
Justin Meskas
▴ 60
0
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1
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2.0k
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GIT: Fetch package source from remote upstream
git
github
developers
updated 7.8 years ago by
nitesh.turaga
▴ 140 • written 7.8 years ago by
wirth
• 0
2
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2
replies
3.5k
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Remote rejected after resetting to previous commit
git
github
updated 8.0 years ago by
nitesh.turaga
▴ 140 • written 8.0 years ago by
alex.gos90
▴ 10
1
vote
3
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2.5k
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Access to github repository- how does one know if their ssh public key was accepted
github
package updates
developers
package development
8.1 years ago
rtraborn
• 0
1
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2
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2.0k
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Bioconductor / COHCAP GitHub Update
github
git-svn bridge
git
8.2 years ago
cwarden45
• 0
6
votes
0
replies
2.7k
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News:
Bioconductor git server is now LIVE!
git
github
svn
git-svn bridge
git mirror
News
8.2 years ago
nitesh.turaga
▴ 140
3
votes
2
replies
3.2k
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How do I clean .git folder?
Git
github
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
Mohamad S. Hasan
• 0
0
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1
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1.5k
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Question about sumbition process and biocviews
biocviews
biocparallel
github
package submission
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
ioannis.vardaxis
▴ 30
0
votes
8
replies
2.4k
views
Bioconductor SVN server error
software error
github
9.2 years ago
emathe
• 0
0
votes
1
reply
1.3k
views
What happends with a package in submission through the old issue tracker?
github
package submission
rDGIdb
issue tracker
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
Thomas Thurnherr
• 0
1
vote
3
replies
2.4k
views
manage github dependency , not CRAN nor bioc
dependency
github
9.8 years ago
kmezhoud
▴ 10
1
vote
2
replies
2.1k
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GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 9.8 years ago by
Dan Tenenbaum
★ 8.2k • written 9.8 years ago by
anthonycolombo60
• 0
6
votes
6
replies
4.3k
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News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 10.4 years ago by
Guangchuang Yu
★ 1.2k • written 10.4 years ago by
Dan Tenenbaum
★ 8.2k
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Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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