Showing : HTqPCR • reset
1
vote
5
replies
1.3k
views
Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 2.3 years ago by • 0 • written 2.4 years ago by ▴ 230
0
votes
3
replies
943
views
Technical Replicates in HTqPCR
HTqPCR
written 2.4 years ago by ▴ 230
0
votes
0
replies
1.1k
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
3.3 years ago Javier • 0
0
votes
0
replies
963
views
Made a pDATA manually for HTqPCR procedure
HTqPCR phenoData esetVis pData
4.3 years ago Marcelo Laia ▴ 450
0
votes
0
replies
810
views
Error when reading qPCR data in SDS format
HTqPCR
4.9 years ago Nghia • 0
1
vote
1
reply
1.8k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 5.1 years ago by 53k • written 10.2 years ago by ▴ 40
3
votes
4
replies
5.1k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 4.3 years ago by ▴ 380 • written 5.1 years ago by ▴ 680
0
votes
0
replies
825
views
Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
5.6 years ago Maximilian Fuchs • 0
0
votes
0
replies
842
views
HTqPCR package, filterCategory function
HTqPCR filterCategory setCategory
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
0
votes
0
replies
1.1k
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
6.5 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
964
views
Analyze ct data using HTqPCR
HTqPCR R NormqPCR
6.6 years ago annesha • 0
0
votes
0
replies
839
views
Error with HTqPCR rbind
HTqPCR
6.7 years ago NAIARA GARCÍA ▴ 10
0
votes
1
reply
1.3k
views
HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma htqpcr
updated 5.1 years ago by • 0 • written 7.1 years ago by • 0
0
votes
0
replies
961
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A problem about changeCtLayout in HTqPCR
htqpcr
7.1 years ago tropicalis • 0
0
votes
3
replies
1.4k
views
Creation of qPCRset in R for HtqPCR
R bioconductor htqpcr qpcrset object
7.4 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
1.1k
views
Creating qPCRset object from Bio-Rad CFX file
htqpcr limma
7.4 years ago dbars • 0
0
votes
0
replies
1.2k
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
7.6 years ago jirkanov • 0
0
votes
0
replies
1.2k
views
Inter-run calibration in HTqPCR R package
htqpcr R
7.7 years ago dbarscortina • 0
0
votes
0
replies
1.3k
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr bioconductor fluidigm biomark
8.0 years ago reed27 • 0
0
votes
0
replies
1.2k
views
HTqPCR for Fluidigm Results
htqpcr fluidigm
8.0 years ago rhonce • 0
0
votes
0
replies
1.2k
views
HTqPCR trouble with changeCtLayout
htqpcr qPCR
8.0 years ago samantha_jeschonek • 0
2
votes
2
replies
1.6k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 8.0 years ago by 53k • written 8.0 years ago by ▴ 10
0
votes
0
replies
998
views
Bugs in HTqPCR 1.30.0?
htqpcr
8.2 years ago h.roest • 0
1
vote
2
replies
1.8k
views
No differential expression with limmaCtData possible
limma htqpcr
8.2 years ago h.roest • 0
0
votes
0
replies
1000
views
HTqPCR package: problems with the limmaCtData function
htqpcr
8.6 years ago Frederico Moraes Ferreira ▴ 100
0
votes
1
reply
1.4k
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
8.8 years ago carine.genet • 0
0
votes
0
replies
1.1k
views
re-format data for HtqPCR
HtqPCR reshape
9.0 years ago Stefany Solano • 0
0
votes
1
reply
1.5k
views
HTqPCR cannot read more recent SDS files
htqpcr
updated 9.0 years ago by • 0 • written 9.1 years ago by ▴ 40
0
votes
3
replies
1.7k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 9.0 years ago by • 0 • written 9.1 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Batch Correction in HTqPCR?
qPCR htqpcr
9.0 years ago bradley • 0
3
votes
1
reply
1.8k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 9.1 years ago by ▴ 40 • written 9.3 years ago by ▴ 20
0
votes
1
reply
1.6k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR htqpcr subsetting
updated 9.1 years ago by ▴ 40 • written 9.3 years ago by ★ 4.1k
3
votes
7
replies
2.8k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
9.1 years ago henrik.seidel ▴ 40
0
votes
0
replies
1.2k
views
HTqPCR - Multiple plates for multiple samples
htqpcr
9.4 years ago Angela LR • 0
0
votes
0
replies
1.2k
views
HTqPCR limma decide test issue?
limma decide test HTqPCR
9.4 years ago polemiraza ▴ 70
0
votes
1
reply
1.7k
views
Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 9.4 years ago by • 0 • written 11.2 years ago by ▴ 830
0
votes
0
replies
1.1k
views
setCategory flag and flag.pout argument problems
htqpcr
9.4 years ago h.roest • 0
0
votes
0
replies
1.5k
views
Combining TLDA cards for normalization
normalization microrna htqpcr
9.6 years ago jamie_jabalee • 0
1
vote
0
replies
2.3k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
9.8 years ago virginia.claudio ▴ 10
0
votes
0
replies
1.4k
views
Error in readCtData
htqpcr readctdata connection readlines
9.8 years ago lizhensor • 0
0
votes
0
replies
1.2k
views
Help with loading Data and reading Ct values
htqpcr
10.0 years ago Pheebz • 0
0
votes
0
replies
1.2k
views
error in reading files using HTqPCR
htqpcr
12.3 years ago • updated 10.1 years ago Alex ▴ 10
0
votes
1
reply
1.5k
views
featureNames converted to numbers in limmaCtData
limma htqpcr
10.5 years ago julio.c.silver • 0
1
vote
7
replies
2.3k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 10.5 years ago by 53k • written 10.5 years ago by • 0
0
votes
0
replies
2.0k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
10.8 years ago H.H. • 0
0
votes
2
replies
1.7k
views
HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
11.2 years ago samantha.smith-4 • 0
0
votes
0
replies
1.3k
views
Bugs in HTqPCR implementation of data normalization
Normalization HTqPCR Normalization HTqPCR
11.6 years ago Peter Langfelder ★ 3.0k
0
votes
0
replies
2.5k
views
reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
11.8 years ago Guest User ★ 13k
0
votes
5
replies
2.0k
views
Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 50
2
votes
1
reply
1.7k
views
HTqPCR- gene names not maintained in limmaCtData
annotate ddCt HTqPCR annotate ddCt HTqPCR
12.0 years ago Cornwell, Adam ▴ 110
134 results • Page 1 of 3
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Replies
Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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