Showing : HTqPCR • reset
1
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5
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611
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Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 6 months ago by • 0 • written 8 months ago by ▴ 230
0
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3
replies
400
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Technical Replicates in HTqPCR
HTqPCR
written 8 months ago by ▴ 230
0
votes
1
reply
1.2k
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HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 18 months ago by • 0 • written 12.4 years ago by ▴ 10
0
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0
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620
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How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
18 months ago Javier • 0
3
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4
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3.1k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 2.6 years ago by ▴ 380 • written 3.3 years ago by ▴ 660
0
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0
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571
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Made a pDATA manually for HTqPCR procedure
HTqPCR phenoData esetVis pData
2.6 years ago Marcelo Laia ▴ 450
0
votes
0
replies
521
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Error when reading qPCR data in SDS format
HTqPCR
3.1 years ago Nghia • 0
1
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1
reply
1.3k
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HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 3.3 years ago by 50k • written 8.4 years ago by ▴ 40
0
votes
1
reply
863
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HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma htqpcr
updated 3.3 years ago by • 0 • written 5.4 years ago by • 0
0
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0
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524
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Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
3.9 years ago Maximilian Fuchs • 0
0
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0
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484
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HTqPCR package, filterCategory function
HTqPCR filterCategory setCategory
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
0
votes
0
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739
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Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
4.8 years ago mohammedtoufiq91 ▴ 10
0
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0
replies
622
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Analyze ct data using HTqPCR
HTqPCR R NormqPCR
4.9 years ago annesha • 0
0
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0
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514
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Error with HTqPCR rbind
HTqPCR
5.0 years ago NAIARA GARCÍA ▴ 10
0
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0
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640
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A problem about changeCtLayout in HTqPCR
htqpcr
5.4 years ago tropicalis • 0
0
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3
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980
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Creation of qPCRset in R for HtqPCR
R bioconductor htqpcr qpcrset object
5.6 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
739
views
Creating qPCRset object from Bio-Rad CFX file
htqpcr limma
5.6 years ago dbars • 0
0
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0
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868
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HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.8 years ago jirkanov • 0
0
votes
0
replies
792
views
Inter-run calibration in HTqPCR R package
htqpcr R
6.0 years ago dbarscortina • 0
0
votes
0
replies
921
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Import problem with HTqPCR Fluidigm 96.96
htqpcr bioconductor fluidigm biomark
6.2 years ago reed27 • 0
0
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0
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825
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HTqPCR for Fluidigm Results
htqpcr fluidigm
6.2 years ago rhonce • 0
0
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0
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822
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HTqPCR trouble with changeCtLayout
htqpcr qPCR
6.3 years ago samantha_jeschonek • 0
2
votes
2
replies
1.0k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 6.3 years ago by 50k • written 6.3 years ago by ▴ 10
0
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0
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727
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Bugs in HTqPCR 1.30.0?
htqpcr
6.5 years ago h.roest • 0
1
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2
replies
1.3k
views
No differential expression with limmaCtData possible
limma htqpcr
6.5 years ago h.roest • 0
0
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0
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753
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HTqPCR package: problems with the limmaCtData function
htqpcr
6.9 years ago Frederico Moraes Ferreira ▴ 100
0
votes
1
reply
1.0k
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
7.1 years ago carine.genet • 0
0
votes
0
replies
853
views
re-format data for HtqPCR
HtqPCR reshape
7.2 years ago Stefany Solano • 0
0
votes
1
reply
1.1k
views
HTqPCR cannot read more recent SDS files
htqpcr
updated 7.3 years ago by • 0 • written 7.3 years ago by ▴ 40
0
votes
3
replies
1.3k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 7.3 years ago by • 0 • written 7.3 years ago by ▴ 40
0
votes
0
replies
884
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Batch Correction in HTqPCR?
qPCR htqpcr
7.3 years ago bradley • 0
3
votes
1
reply
1.4k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 7.3 years ago by ▴ 40 • written 7.5 years ago by ▴ 20
0
votes
1
reply
1.3k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR htqpcr subsetting
updated 7.3 years ago by ▴ 40 • written 7.5 years ago by ★ 4.0k
3
votes
7
replies
2.1k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
7.3 years ago henrik.seidel ▴ 40
0
votes
0
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819
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HTqPCR - Multiple plates for multiple samples
htqpcr
7.6 years ago Angela LR • 0
0
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0
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943
views
HTqPCR limma decide test issue?
limma decide test HTqPCR
7.6 years ago polemiraza ▴ 70
0
votes
1
reply
1.4k
views
Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 7.6 years ago by • 0 • written 9.5 years ago by ▴ 830
0
votes
0
replies
751
views
setCategory flag and flag.pout argument problems
htqpcr
7.6 years ago h.roest • 0
0
votes
0
replies
1.0k
views
Combining TLDA cards for normalization
normalization microrna htqpcr
7.8 years ago jamie_jabalee • 0
1
vote
0
replies
2.0k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
8.1 years ago • updated 8.0 years ago virginia.claudio ▴ 10
0
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0
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1.1k
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Error in readCtData
htqpcr readctdata connection readlines
8.1 years ago lizhensor • 0
0
votes
0
replies
936
views
Help with loading Data and reading Ct values
htqpcr
8.2 years ago Pheebz • 0
0
votes
0
replies
949
views
error in reading files using HTqPCR
htqpcr
10.6 years ago • updated 8.4 years ago Alex ▴ 10
0
votes
1
reply
1.2k
views
featureNames converted to numbers in limmaCtData
limma htqpcr
8.8 years ago julio.c.silver • 0
1
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7
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1.7k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 8.8 years ago by 50k • written 8.8 years ago by • 0
0
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0
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1.5k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
9.1 years ago H.H. • 0
0
votes
2
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1.2k
views
HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
9.4 years ago samantha.smith-4 • 0
0
votes
0
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1.0k
views
Bugs in HTqPCR implementation of data normalization
Normalization HTqPCR Normalization HTqPCR
9.9 years ago Peter Langfelder ★ 3.0k
0
votes
0
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2.1k
views
reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
10.0 years ago Guest User ★ 13k
0
votes
5
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1.5k
views
Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 50
50 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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