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HiC
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0
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103
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 11 days ago by
Chaoability
• 0
0
votes
0
replies
564
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
16 months ago
user_bioinfo
• 0
0
votes
2
replies
800
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 2.0 years ago by
IsMM
• 0
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
3.5 years ago
xubeisi
• 0
0
votes
0
replies
1.5k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
4.1 years ago
Ankit
▴ 20
0
votes
3
replies
1.3k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.6 years ago by
merve.sahn
• 0 • written 5.1 years ago by
mtS
• 0
0
votes
0
replies
932
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
5.2 years ago
changxu.fan
▴ 20
1
vote
7
replies
2.3k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 5.3 years ago by
Aaron Lun
★ 29k • written 5.3 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.3k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 5.6 years ago by
Aaron Lun
★ 29k • written 5.6 years ago by
girardot
• 0
0
votes
1
reply
1.4k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 6.2 years ago by
Kevin Blighe
★ 4.0k • written 6.2 years ago by
c.chakraborty
• 0
0
votes
3
replies
2.1k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 6.9 years ago by
bioparticles.melly
• 0 • written 6.9 years ago by
m.t.lorenc
• 0
0
votes
9
replies
2.4k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 7.0 years ago by
Aaron Lun
★ 29k • written 7.0 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.3k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
7.0 years ago
mictadlo
▴ 10
1
vote
1
reply
2.1k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 7.3 years ago by
Aaron Lun
★ 29k • written 7.3 years ago by
gryderart
• 0
2
votes
1
reply
1.7k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 8.1 years ago by
Aaron Lun
★ 29k • written 8.1 years ago by
hwick1
▴ 20
0
votes
8
replies
2.4k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 8.2 years ago by
Aaron Lun
★ 29k • written 8.2 years ago by
hwick1
▴ 20
2
votes
2
replies
1.9k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
8.4 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
2.1k
views
GOTHiC hg19 error
GOTHiC
hic
10.3 years ago • updated 10.2 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
3.6k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.3 years ago
Bogdan
▴ 670
19 results • Page
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Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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