Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
HiC
•
reset
0
votes
0
replies
476
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
13 months ago
user_bioinfo
• 0
0
votes
2
replies
724
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 21 months ago by
IsMM
• 0
0
votes
0
replies
1.2k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
3.3 years ago
xubeisi
• 0
0
votes
0
replies
1.3k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
3.8 years ago
Ankit
▴ 20
0
votes
3
replies
1.2k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.4 years ago by
merve.sahn
• 0 • written 4.9 years ago by
mtS
• 0
0
votes
0
replies
856
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
4.9 years ago
changxu.fan
▴ 20
1
vote
7
replies
2.2k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 5.1 years ago by
Aaron Lun
★ 29k • written 5.1 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.3k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 5.4 years ago by
Aaron Lun
★ 29k • written 5.4 years ago by
girardot
• 0
0
votes
1
reply
1.3k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 6.0 years ago by
Kevin Blighe
★ 4.0k • written 6.0 years ago by
c.chakraborty
• 0
0
votes
3
replies
2.0k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 6.7 years ago by
bioparticles.melly
• 0 • written 6.7 years ago by
m.t.lorenc
• 0
0
votes
9
replies
2.2k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.2k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
6.8 years ago
mictadlo
▴ 10
1
vote
1
reply
2.0k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
gryderart
• 0
2
votes
1
reply
1.7k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 7.9 years ago by
Aaron Lun
★ 29k • written 7.9 years ago by
hwick1
▴ 20
0
votes
8
replies
2.2k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 7.9 years ago by
Aaron Lun
★ 29k • written 7.9 years ago by
hwick1
▴ 20
2
votes
2
replies
1.8k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
8.1 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
2.0k
views
GOTHiC hg19 error
GOTHiC
hic
10.0 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
3.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.0 years ago
Bogdan
▴ 670
18 results • Page
1 of 1
Recent ...
Replies
Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la
by
zhaoqiansun0592
• 0
Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…
Comment: Could we detect difference at pathway level but not significant different at gen
by
zhaoqiansun0592
• 0
Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
zhaoqiansun0592
• 0
Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards
• All
Popular Question
to
Paulito
• 0
Popular Question
to
geneprophet
• 0
Popular Question
to
Hervé Pagès
16k
Teacher
to
Gordon Smyth
53k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Locations
• All
San Diego,
21 minutes ago
The city by the bay,
1 hour ago
WEHI, Melbourne, Australia,
1 hour ago
St Louis, MO,
2 hours ago
United States,
2 hours ago
Traffic: 1672 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6