Bioconductor HiC

Showing : HiC • reset

votes

replies

357

views

ChIPSeqData interact GenomicRanges HiC

8 months ago user_bioinfo • 0

votes

replies

622

views

JuicerTools HiC HiCDCPlus Java Juicer

written 16 months ago by IsMM • 0

votes

replies

1.1k

views

HiC Epigenetics HiCHIP ChIPSeq

2.9 years ago xubeisi • 0

votes

replies

1.2k

views

HOMER HiCUP BAM HiC

3.4 years ago Ankit ▴ 20

votes

replies

1.1k

views

HiCDCPlus HiC-DC+ HiCcompare HiC

updated 3.0 years ago by merve.sahn • 0 • written 4.5 years ago by mtS • 0

votes

replies

776

views

HiC hicrep HiCcompare

4.5 years ago changxu.fan ▴ 20

vote

replies

2.0k

views

diffHic GenomicInteractions edgeR HiC cooler

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Marco Blanchette ▴ 30

votes

1.2k

views

diffHic HiC InteractionSet

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by girardot • 0

votes

1.2k

views

HiCompare HiC cool

updated 5.6 years ago by Kevin Blighe ★ 4.0k • written 5.6 years ago by c.chakraborty • 0

votes

replies

1.9k

views

hic

updated 6.3 years ago by bioparticles.melly • 0 • written 6.3 years ago by m.t.lorenc • 0

votes

replies

2.0k

views

diffhic gothic hicup hic-c hic

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by mictadlo ▴ 10

votes

1.1k

views

hic diffhic gothic hicup hic-c

6.4 years ago mictadlo ▴ 10

vote

1.8k

views

hic diffhic chromatin bedpe

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by gryderart • 0

votes

1.5k

views

diffhic hic interactionset contactmatrix inflate

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by hwick1 ▴ 20

votes

replies

2.1k

views

diffhic hic

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by hwick1 ▴ 20

votes

replies

1.7k

views

diffhic hicpro hic

7.7 years ago sergio.espeso-gil • 0

votes

replies

1.9k

views

GOTHiC hic

9.6 years ago Nathan Sheffield ▴ 10

votes

replies

3.2k

views

HiTC gothic diffhic HiC

9.6 years ago Bogdan ▴ 670

18 results • Page 1 of 1

Recent ...

Replies

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Votes

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

Awards • All

Scholar to Gordon Smyth 52k