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HiC
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 4 weeks ago by
Chaoability
• 0
0
votes
0
replies
588
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
17 months ago
user_bioinfo
• 0
0
votes
2
replies
831
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 2.1 years ago by
IsMM
• 0
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
3.6 years ago
xubeisi
• 0
0
votes
0
replies
1.5k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
4.1 years ago
Ankit
▴ 20
0
votes
3
replies
1.3k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.7 years ago by
merve.sahn
• 0 • written 5.2 years ago by
mtS
• 0
0
votes
0
replies
960
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
5.2 years ago
changxu.fan
▴ 20
1
vote
7
replies
2.4k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 5.4 years ago by
Aaron Lun
★ 29k • written 5.4 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.4k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
girardot
• 0
0
votes
1
reply
1.4k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 6.3 years ago by
Kevin Blighe
★ 4.0k • written 6.3 years ago by
c.chakraborty
• 0
0
votes
3
replies
2.1k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 7.0 years ago by
bioparticles.melly
• 0 • written 7.0 years ago by
m.t.lorenc
• 0
0
votes
9
replies
2.4k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.3k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
7.1 years ago
mictadlo
▴ 10
1
vote
1
reply
2.1k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 7.4 years ago by
Aaron Lun
★ 29k • written 7.4 years ago by
gryderart
• 0
2
votes
1
reply
1.8k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 8.2 years ago by
Aaron Lun
★ 29k • written 8.2 years ago by
hwick1
▴ 20
0
votes
8
replies
2.4k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 8.2 years ago by
Aaron Lun
★ 29k • written 8.2 years ago by
hwick1
▴ 20
2
votes
2
replies
2.0k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
8.4 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
2.1k
views
GOTHiC hg19 error
GOTHiC
hic
10.3 years ago
Nathan Sheffield
▴ 20
4
votes
20
replies
3.6k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.4 years ago • updated 10.3 years ago
Bogdan
▴ 670
19 results • Page
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Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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