Showing : HiC • reset
0
votes
1
reply
93
views
Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC HiCDCPlus
written 8 days ago by • 0
0
votes
0
replies
562
views
hichip fragments extraction chip seq
ChIPSeqData interact GenomicRanges HiC
16 months ago user_bioinfo • 0
0
votes
2
replies
796
views
Java error while running HiCDC overview code
JuicerTools HiC HiCDCPlus Java Juicer
written 2.0 years ago by • 0
0
votes
0
replies
1.4k
views
Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
3.5 years ago xubeisi • 0
0
votes
0
replies
1.5k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER HiCUP BAM HiC
4.1 years ago Ankit ▴ 20
0
votes
3
replies
1.3k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus HiC-DC+ HiCcompare HiC
updated 3.6 years ago by • 0 • written 5.1 years ago by • 0
0
votes
0
replies
928
views
Looking for a package to efficiently plot Hi-C contact maps
HiC hicrep HiCcompare
5.1 years ago changxu.fan ▴ 20
1
vote
7
replies
2.3k
views
problem recasting InteractionSet into a DGEList
diffHic GenomicInteractions edgeR HiC cooler
updated 5.3 years ago by ★ 29k • written 5.3 years ago by ▴ 30
0
votes
1
reply
1.3k
views
How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 5.6 years ago by ★ 29k • written 5.6 years ago by • 0
0
votes
1
reply
1.4k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare HiC cool
updated 6.2 years ago by ★ 4.0k • written 6.2 years ago by • 0
0
votes
3
replies
2.1k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 6.9 years ago by • 0 • written 6.9 years ago by • 0
0
votes
9
replies
2.4k
views
from denove contig assembly to chromosome bins
diffhic gothic hicup hic-c hic
updated 7.0 years ago by ★ 29k • written 7.0 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic diffhic gothic hicup hic-c
7.0 years ago mictadlo ▴ 10
1
vote
1
reply
2.1k
views
extract HiC contacts for a given BEDPE set of coordinates
hic diffhic chromatin bedpe
updated 7.3 years ago by ★ 29k • written 7.3 years ago by • 0
2
votes
1
reply
1.7k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 8.1 years ago by ★ 29k • written 8.1 years ago by ▴ 20
0
votes
8
replies
2.4k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic hic
updated 8.2 years ago by ★ 29k • written 8.2 years ago by ▴ 20
2
votes
2
replies
1.9k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic hicpro hic
8.4 years ago sergio.espeso-gil • 0
0
votes
3
replies
2.1k
views
GOTHiC hg19 error
GOTHiC hic
10.3 years ago • updated 10.2 years ago Nathan Sheffield ▴ 10
4
votes
20
replies
3.6k
views
scaling loess curves
HiTC gothic diffhic HiC
10.3 years ago Bogdan ▴ 670
19 results • Page 1 of 1
Recent ...
Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Scholar to Nikos Ignatiadis ▴ 180
Popular Question to Robert • 0
Popular Question to lamia11me • 0
Popular Question to Gordon Smyth 53k
Locations • All
The city by the bay, 37 minutes ago
WEHI, Melbourne, Australia, 42 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Melbourne, Australia, 1 hour ago
Traffic: 2188 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6