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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
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0
Hi Emily,
He left some comments regarding normalization. Here is the relevant quote:
> The EList object produced by dpcQuant(), containi…
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James W. MacDonald
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Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR
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mohammedtoufiq91
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@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe
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jason.chai
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Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
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This is qq plot and histogram generated before bacon correction
![enter image description here][1]
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