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PCAtools
•
reset
0
votes
0
replies
293
views
Problem with PCAtool as dependencie
COTAN
PCAtools
12 months ago
Silvia
• 0
1
vote
2
replies
1.2k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
21 months ago • updated 20 months ago
BioinfGuru
▴ 70
0
votes
2
replies
811
views
PCA plot suggestions
DESeq2
PCAtools
updated 21 months ago by
Michael Love
43k • written 21 months ago by
Aaliya
• 0
0
votes
7
replies
2.9k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 21 months ago by
swbarnes2
★ 1.4k • written 21 months ago by
Aaliya
• 0
3
votes
6
replies
2.5k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 22 months ago by
Fabian
• 0
4
votes
8
replies
6.6k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 2.8 years ago by
CP
• 0 • written 4.7 years ago by
elizabethe819
• 0
1
vote
3
replies
2.2k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 3.0 years ago by
Kevin Blighe
★ 4.0k • written 3.0 years ago by
M Tuhin
• 0
1
vote
1
reply
2.1k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 3.2 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.4k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 3.5 years ago by
James W. MacDonald
68k • written 3.5 years ago by
pterry
• 0
0
votes
3
replies
2.6k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 3.6 years ago by
Federico Marini
▴ 180 • written 3.6 years ago by
m610110001
• 0
5
votes
6
replies
4.6k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
3.8 years ago
Alan
• 0
3
votes
2
replies
1.5k
views
PCAtools lables missing or out of the plot
PCAtools
4.9 years ago
luca.s
▴ 50
3
votes
3
replies
4.2k
views
PCAtools - change colour of points
PCAtools
updated 5.0 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
Terra
• 0
3
votes
15
replies
4.7k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 5.1 years ago by
Kevin Blighe
★ 4.0k • written 5.1 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.7k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
ecg1g15
▴ 30
1
vote
3
replies
2.2k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.6k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 4.1 years ago by
Miguel
▴ 20 • written 5.5 years ago by
k.vitting.seerup
▴ 120
17 results • Page
1 of 1
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Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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to
Michael Love
43k
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fl
▴ 20
Popular Question
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James W. MacDonald
68k
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rcavalca
▴ 140
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James Aiden
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