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PCAtools
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0
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0
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201
views
Problem with PCAtool as dependencie
COTAN
PCAtools
8 months ago
Silvia
• 0
1
vote
2
replies
1.1k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
16 months ago
BioinfGuru
▴ 70
0
votes
2
replies
686
views
PCA plot suggestions
DESeq2
PCAtools
updated 17 months ago by
Michael Love
43k • written 17 months ago by
Aaliya
• 0
0
votes
7
replies
2.6k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 17 months ago by
swbarnes2
★ 1.4k • written 17 months ago by
Aaliya
• 0
3
votes
6
replies
2.2k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 18 months ago by
Fabian
• 0
4
votes
8
replies
6.0k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 2.5 years ago by
CP
• 0 • written 4.3 years ago by
elizabethe819
• 0
1
vote
3
replies
2.0k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 2.7 years ago by
Kevin Blighe
★ 4.0k • written 2.7 years ago by
M Tuhin
• 0
1
vote
1
reply
1.9k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 2.9 years ago by
Kevin Blighe
★ 4.0k • written 2.9 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.2k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
pterry
• 0
0
votes
3
replies
2.3k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 3.3 years ago by
Federico Marini
▴ 180 • written 3.3 years ago by
m610110001
• 0
5
votes
6
replies
4.2k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
3.4 years ago
Alan
• 0
3
votes
2
replies
1.3k
views
PCAtools lables missing or out of the plot
PCAtools
4.5 years ago
luca.s
▴ 50
3
votes
3
replies
3.9k
views
PCAtools - change colour of points
PCAtools
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
Terra
• 0
3
votes
15
replies
4.4k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.5k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
ecg1g15
▴ 30
1
vote
3
replies
2.1k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 4.9 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.4k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 3.8 years ago by
Miguel
▴ 20 • written 5.1 years ago by
k.vitting.seerup
▴ 120
17 results • Page
1 of 1
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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ReinholdGaylord99
• 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
• 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub
by
shepherl
4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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