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PCAtools
•
reset
0
votes
0
replies
294
views
Problem with PCAtool as dependencie
COTAN
PCAtools
12 months ago
Silvia
• 0
1
vote
2
replies
1.2k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
21 months ago
BioinfGuru
▴ 70
0
votes
2
replies
812
views
PCA plot suggestions
DESeq2
PCAtools
updated 21 months ago by
Michael Love
43k • written 21 months ago by
Aaliya
• 0
0
votes
7
replies
2.9k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 21 months ago by
swbarnes2
★ 1.4k • written 21 months ago by
Aaliya
• 0
3
votes
6
replies
2.5k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 22 months ago by
Fabian
• 0
4
votes
8
replies
6.6k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 2.8 years ago by
CP
• 0 • written 4.7 years ago by
elizabethe819
• 0
1
vote
3
replies
2.2k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 3.1 years ago by
Kevin Blighe
★ 4.0k • written 3.1 years ago by
M Tuhin
• 0
1
vote
1
reply
2.1k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 3.2 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.4k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 3.5 years ago by
James W. MacDonald
68k • written 3.5 years ago by
pterry
• 0
0
votes
3
replies
2.6k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 3.6 years ago by
Federico Marini
▴ 180 • written 3.6 years ago by
m610110001
• 0
5
votes
6
replies
4.6k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
3.8 years ago
Alan
• 0
3
votes
2
replies
1.5k
views
PCAtools lables missing or out of the plot
PCAtools
4.9 years ago
luca.s
▴ 50
3
votes
3
replies
4.2k
views
PCAtools - change colour of points
PCAtools
updated 5.0 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
Terra
• 0
3
votes
15
replies
4.7k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 5.1 years ago by
Kevin Blighe
★ 4.0k • written 5.1 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.7k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
ecg1g15
▴ 30
1
vote
3
replies
2.2k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.6k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 4.1 years ago by
Miguel
▴ 20 • written 5.5 years ago by
k.vitting.seerup
▴ 120
17 results • Page
1 of 1
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by
Tikaaaq2c
• 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
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Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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