Bioconductor RNA-SEQ

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278

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filtering RNA-Seq CPM edgeR filterByExpr

updated 10 days ago by Gordon Smyth 47k • written 10 days ago by mohammedtoufiq91 ▴ 10

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202

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 25 days ago by James W. MacDonald 63k • written 26 days ago by FedeXander • 0

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231

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 25 days ago by James W. MacDonald 63k • written 26 days ago by FedeXander • 0

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181

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DESeq2 statistics rna-seq

updated 7 weeks ago by ATpoint ★ 2.9k • written 7 weeks ago by SH • 0

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142

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rna-seq Read10X_h5 atac modalities

updated 10 weeks ago by James W. MacDonald 63k • written 10 weeks ago by Cynthia • 0

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206

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DESeq2 rna-seq

updated 10 weeks ago by ATpoint ★ 2.9k • written 10 weeks ago by genome_nerd • 0

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160

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SingleCell Spatial RNA-seq

3 months ago Jenny Drnevich ★ 2.0k

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290

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 6 months ago by Michael Love 40k • written 6 months ago by abhay.kanodia • 0

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923

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GSVA RNA-Seq RSEM Expected_Count

10 months ago Yang Shi ▴ 10

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508

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limma Clustering voom RNA-Seq

10 months ago Yang Shi ▴ 10

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449

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Patient_stratification Multi-omics RNA-seq Kidney_Disease

10 months ago eolson • 0

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414

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MDS RNA-Seq

updated 10 months ago by Gordon Smyth 47k • written 10 months ago by Pei • 0

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776

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gage rna-seq pathwayanalysis

updated 24 days ago by Rob • 0 • written 2.6 years ago by microPhD • 0

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1.2k

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go software error topgo rna-seq

updated 4 months ago by James W. MacDonald 63k • written 3.0 years ago by morteza.aslanzadeh ▴ 30

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552

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RNA-seq Nested paired design limma

updated 3 months ago by Gordon Smyth 47k • written 3.2 years ago by ibrahim.akkouh • 0

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4.5k

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RNA-seq featureCounts total RNA

updated 7 months ago by snijesh ▴ 20 • written 5.1 years ago by inah ▴ 10

16 results • Page 1 of 1

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Comment: Handling NA's in Deseq2 by Asger Mølgaard • 0

Dear ATpoint Thank you for your response - it works like a charm! You just saved a PhD-study! Thank you :)

Comment: Ensembl plants at annotationHub? by Bruno • 0

Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 3.6k

You did not show the code that resulted in that error, so we have to guess what you did. Yet, the [R package][1] `Signac` contains the func…

Comment: Query regarding phyloseq object construct with QIIME output by betterwound • 0

Thanks for sharing the code [geometry dash](https://geometrydash.io/)

Answer: Ensembl plants at annotationHub? by Bruno • 0

Hi Johannes, First, thank you so much for providing these annotations for the community. We feel often a bit left off in the plant commu…

Votes

C: Minimum number of samples per treatment/group for WGCNA analysis

A: Minimum number of samples per treatment/group for WGCNA analysis

Minimum number of samples per treatment/group for WGCNA analysis

Comment: DESeq2 on multilevel design variable

Comment: Ensembl plants at annotationHub?

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