Bioconductor RNA-seq

Showing : RNA-seq • reset

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1.6k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

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7.8k

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deseq2 edgeR rna-seq

updated 18 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

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338

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rna-seq edgeR

updated 15 days ago by Gordon Smyth 50k • written 28 days ago by Netanel • 0

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2.2k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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176

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RNA-seq DESeq2

updated 1 day ago by ATpoint ★ 4.1k • written 3 days ago by Reza • 0

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910

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correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.1k • written 6.1 years ago by saad_k6 • 0

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713

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RNA-seq DESeq2

7 months ago • updated 6 months ago ar14g12 • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by mohammedtoufiq91 ▴ 10

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690

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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716

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by FedeXander • 0

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660

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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876

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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314

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RNA-Seq WGCNA Worms

5 months ago davca • 0

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1.2k

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gage rna-seq pathwayanalysis

updated 12 months ago by Rob • 0 • written 3.5 years ago by microPhD • 0

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858

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by FedeXander • 0

17 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k