Bioconductor RNA-seq

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164

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RNA-seq DESeq2

updated 1 day ago by ATpoint ★ 4.1k • written 3 days ago by Reza • 0

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338

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rna-seq edgeR

updated 15 days ago by Gordon Smyth 50k • written 28 days ago by Netanel • 0

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314

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RNA-Seq WGCNA Worms

5 months ago davca • 0

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713

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RNA-seq DESeq2

7 months ago • updated 6 months ago ar14g12 • 0

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1.6k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

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660

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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876

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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688

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by mohammedtoufiq91 ▴ 10

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715

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by FedeXander • 0

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857

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by FedeXander • 0

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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1.2k

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gage rna-seq pathwayanalysis

updated 11 months ago by Rob • 0 • written 3.5 years ago by microPhD • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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2.2k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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910

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correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.1k • written 6.1 years ago by saad_k6 • 0

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7.8k

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deseq2 edgeR rna-seq

updated 18 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

17 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10

Thanks for your thoughtful and detailed comment, Gordon

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …

Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k

As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…

Votes

Answer: Method to find pathways different between 2 groups

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

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