Bioconductor RNA-seq

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217

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DESeq2 PCAplot RNA-Seq DesignModel

updated 3 days ago by Michael Love 42k • written 6 days ago by shaunpeterson • 0

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297

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rna-seq duplicateCorrelation limma voom

14 days ago • updated 13 days ago Dylan.Sheerin • 0

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267

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RNA-seq DESeq2

updated 18 days ago by ATpoint ★ 4.2k • written 20 days ago by Reza • 0

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372

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rna-seq edgeR

updated 4 weeks ago by Gordon Smyth 50k • written 6 weeks ago by Netanel • 0

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921

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correlation pearsoncorrelation rna-seq differential gene expression

updated 5 months ago by ATpoint ★ 4.2k • written 6.1 years ago by saad_k6 • 0

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332

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RNA-Seq WGCNA Worms

6 months ago davca • 0

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737

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RNA-seq DESeq2

7 months ago ar14g12 • 0

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3.6k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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1.7k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by gingergeiger22 • 0

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701

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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899

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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716

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rna-seq salmon fishpond swish

updated 11 months ago by Michael Love 42k • written 11 months ago by samuelcjx • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by mohammedtoufiq91 ▴ 10

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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730

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noiseq RNA-seq quality control

updated 2 days ago by baptiste.bidon • 0 • written 4.7 years ago by ag1805x ▴ 80

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2.3k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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7.9k

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deseq2 edgeR rna-seq

updated 5 weeks ago by Elizabeth • 0 • written 8.9 years ago by gthm ▴ 30

17 results • Page 1 of 1

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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by jovel_juan ▴ 30

enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

SAF files must not have a header.

Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by xuz • 0

Could you try the latest version (1.40.1) to see how it works, I am not able to replicate the error message on my computer here.

Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by merv ▴ 120

Thanks! I can confirm it is working now - had been broken since sometime yesterday.

Comment: Errors in chromosome annotation-biomaRt by landenshanie ▴ 40

Thank you, I ran your exact code and it correct for Xist, however Ddx3y is still wrongly annotated to chr13 and, like your results, Dusp1 i…

Votes

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

Seurat to SingleCellExperiment Converting error in MAC

Error when converting Seurat to SingleCellExperiment

Comment: unable to access bioconductor packages - qvalue installation failed...

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