Showing : ReportingTools • reset
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Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools RNA-Seq RMarkdown
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 20
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4
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859
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ReportingTools publish(): no image when .modifyDF argument is included
ReportingTools
updated 5.1 years ago by 65k • written 5.1 years ago by • 0
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1.6k
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ReportingTools: Error using packet 1 arguments must have same length
reportingtools
5.4 years ago mmokrejs • 0
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635
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Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2
5.6 years ago trebbiano • 0
3
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7
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1.9k
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ReportingTools Segmentation fault
reportingtools reporting tools
updated 6.0 years ago by ▴ 10 • written 6.0 years ago by ▴ 20
2
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2
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1.1k
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How to add more columns to ReportingTools output?
reportingtools microarray annotation differential expression differential analysis
updated 6.4 years ago by 65k • written 6.4 years ago by • 0
0
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1.6k
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Select what conditionsto graph in Report tools with Deseq containing multiple conditions
deseq2 ggplot2 reportingtools
7.5 years ago abass.conteh • 0
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Error when installing ReportingTools
reportingtools
7.8 years ago Asma rabe ▴ 290
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4
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1.4k
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Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 20
2
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ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 7.8 years ago by 41k • written 7.8 years ago by ▴ 10
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2
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Generating database with non model species to be use by ReportingTools
reportingtools annotationdbi annotationhub ensembldb
updated 7.9 years ago by ★ 2.0k • written 7.9 years ago by ▴ 20
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8
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1.7k
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ReportingTools include pvalue NA and comparissons
R reportingtools deseq2 pvalue coef
updated 7.9 years ago by 41k • written 7.9 years ago by ▴ 10
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1
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1.5k
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DESeq2 followed by Reporting tools lists blank ensemble gene ID's and symbols but has image, logFC and p-value intact in HTML file
deseq2 rnaseq reportingtools
updated 8.0 years ago by 41k • written 8.0 years ago by • 0
1
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4
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1.2k
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Methods in ReportingTools
reportingtools
updated 8.6 years ago by ▴ 70 • written 8.6 years ago by • 0
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1.2k
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Change column width in ReportingTools
reportingtools
8.7 years ago benedikt.athmer • 0
1
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1
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1.1k
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How to add search functions and additional fields to the html file of DESeq2 results created with ReportingTools
ReportingTools deseq2 hwriter
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 30
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2
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1.4k
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hwriter or reportingtools: open link in new tab?
hyperlink ReportingTools hwriter
9.0 years ago Wade Davis ▴ 60
2
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3
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1.5k
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HTMLReport with Ensembl IDs, with multifactorial design
DESeq2 ReportingTools
updated 9.1 years ago by 65k • written 9.1 years ago by ▴ 150
4
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6
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2.7k
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HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools publish deseq2
updated 9.1 years ago by ▴ 150 • written 9.4 years ago by • 0
6
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1
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3.1k
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[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.3 years ago by ▴ 370 • written 10.4 years ago by ▴ 160
1
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6
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1.9k
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Problem on annotation of Deseq2 on reportingtools
Deseq2 reportingtools
updated 9.5 years ago by ▴ 70 • written 9.5 years ago by ▴ 40
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2
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1.1k
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ReportingTools does not work with PFAMHyperGResult object
reportingtools
updated 9.6 years ago by 1.6k • written 9.6 years ago by • 0
0
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5
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2.6k
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Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.9 years ago by ▴ 160 • written 9.9 years ago by 65k
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5
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1.7k
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ReportingTools error message
DESeq ReportingTools DESeq2 DESeq ReportingTools DESeq2
9.9 years ago Assa Yeroslaviz ★ 1.5k
0
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1.2k
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KEGG pathway analysis with ReportingTools
Pathways GO ReportingTools Pathways GO ReportingTools
10.1 years ago Mayte Suarez-Farinas ▴ 510
0
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3
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1.8k
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ReportingTools and gene annotation
Annotation GO cycle ReportingTools DESeq2 Annotation GO cycle ReportingTools DESeq2
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 340
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7
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2.7k
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[ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default
Sequencing ReportingTools DESeq2 Sequencing ReportingTools DESeq2
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 30
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2
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1.6k
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Question about ReportingTools used with DESeq2
GO BSgenome BSgenome ReportingTools DESeq2 GO BSgenome BSgenome ReportingTools DESeq2
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 80
0
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1
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1.1k
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ReportingTools package
ReportingTools ReportingTools
updated 10.5 years ago by ▴ 10 • written 10.5 years ago by ▴ 160
0
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0
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856
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ReportingTools: formatting html report
Alignment ReportingTools Alignment ReportingTools
10.9 years ago Gabriel Becker ▴ 70
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2.0k
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emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
11.3 years ago Malcolm Cook ★ 1.6k
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12
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2.2k
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new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 20
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Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM() by James W. MacDonald 65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient by JKim • 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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