Bioconductor SVAseq

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456

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DESeq2 Normalisation Bulkrnaseq Svaseq

5 months ago BioinfGuru ▴ 70

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833

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RUVSeq svaseq

2.4 years ago Tongjun • 0

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1.3k

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RNASeq sva svaseq

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by Bex • 0

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953

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limma sva Leafcutter SVAseq

3.2 years ago georgia.katsoula ▴ 40

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942

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sva svaseq surrogate variable analysis

updated 4.6 years ago by James W. MacDonald 67k • written 4.6 years ago by Mozart ▴ 30

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1.1k

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svaseq sva

5.7 years ago flippy23 • 0

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1.0k

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MEDIPS svaseq sva

updated 5.8 years ago by Lukas Chavez ▴ 570 • written 5.8 years ago by tofukaj • 0

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1.9k

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deseq2 svaseq

5.8 years ago bioinfo • 0

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1.7k

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edger sva svaseq limma

updated 6.5 years ago by Ryan C. Thompson ★ 7.9k • written 6.5 years ago by cats_dogs ▴ 20

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3.6k

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DESeq2 sva svaseq batch effect correction

6.8 years ago L_K • 0

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1.2k

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svaseq batcheffectcorrection

7.0 years ago burcu.atasu • 0

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1.7k

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ruvseq svaseq edaseq

updated 7.0 years ago by davide risso ▴ 980 • written 7.0 years ago by llo ▴ 10

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1.4k

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sva svaseq batch effect batch effects batch effect correction

7.3 years ago vedran.franke • 0

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1.9k

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deseq2 svaseq

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by gpalidwor ▴ 10

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2.0k

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sva svaseq

updated 7.4 years ago by Guido Hooiveld ★ 4.1k • written 7.4 years ago by wamiqsaifi • 0

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2.7k

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limma sva svaseq

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by Bogdan ▴ 670

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2.0k

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svaseq dexseq

updated 7.8 years ago by Alejandro Reyes ★ 1.9k • written 7.8 years ago by tofukaj • 0

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2.7k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 8.1 years ago by Jakub ▴ 50 • written 8.1 years ago by amoltej ▴ 10

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deseq2 svaseq

8.1 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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2.0k

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deseq2 sva svaseq

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by szenitha ▴ 20

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2.7k

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sva svaseq batcheffectcorrection

updated 8.3 years ago by Jeff Leek ▴ 650 • written 8.3 years ago by szenitha ▴ 20

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4.0k

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deseq2 sva svaseq pca

8.4 years ago Peter Alto ▴ 10

22 results • Page 1 of 1

Recent ...

Replies

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Votes

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

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