Bioconductor SVAseq

Showing : SVAseq • reset

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921

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DESeq2 Normalisation Bulkrnaseq Svaseq

17 months ago BioinfGuru ▴ 70

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1.1k

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RUVSeq svaseq

3.4 years ago Tongjun • 0

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1.5k

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RNASeq sva svaseq

updated 3.8 years ago by James W. MacDonald 68k • written 3.8 years ago by Bex • 0

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1.2k

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limma sva Leafcutter SVAseq

4.2 years ago georgia.katsoula ▴ 40

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1.2k

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sva svaseq surrogate variable analysis

updated 5.6 years ago by James W. MacDonald 68k • written 5.6 years ago by Mozart ▴ 30

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1.3k

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svaseq sva

6.7 years ago flippy23 • 0

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1.2k

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MEDIPS svaseq sva

updated 6.8 years ago by Lukas Chavez ▴ 570 • written 6.8 years ago by tofukaj • 0

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2.3k

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deseq2 svaseq

6.8 years ago bioinfo • 0

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2.1k

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edger sva svaseq limma

updated 7.5 years ago by Ryan C. Thompson ★ 7.9k • written 7.5 years ago by cats_dogs ▴ 20

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4.2k

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DESeq2 sva svaseq batch effect correction

7.8 years ago L_K • 0

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1.5k

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svaseq batcheffectcorrection

8.0 years ago burcu.atasu • 0

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2.0k

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ruvseq svaseq edaseq

updated 8.0 years ago by davide risso ▴ 980 • written 8.1 years ago by llo ▴ 10

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1.6k

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sva svaseq batch effect batch effects batch effect correction

8.3 years ago vedran.franke • 0

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2.2k

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deseq2 svaseq

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by gpalidwor ▴ 10

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2.4k

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sva svaseq

updated 8.4 years ago by Guido Hooiveld ★ 4.1k • written 8.4 years ago by wamiqsaifi • 0

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2.9k

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limma sva svaseq

updated 8.7 years ago by Aaron Lun ★ 29k • written 8.7 years ago by Bogdan ▴ 670

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2.3k

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svaseq dexseq

updated 8.8 years ago by Alejandro Reyes ★ 1.9k • written 8.8 years ago by tofukaj • 0

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3.4k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 9.1 years ago by Jakub ▴ 50 • written 9.1 years ago by amoltej ▴ 10

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6.5k

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deseq2 svaseq

9.1 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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2.4k

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deseq2 sva svaseq

updated 9.2 years ago by Michael Love 43k • written 9.3 years ago by szenitha ▴ 20

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3.1k

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sva svaseq batcheffectcorrection

updated 9.3 years ago by Jeff Leek ▴ 650 • written 9.3 years ago by szenitha ▴ 20

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4.3k

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deseq2 sva svaseq pca

9.5 years ago • updated 9.4 years ago Peter Alto ▴ 20

22 results • Page 1 of 1

Recent ...

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Answer: limpa - drivers for unusually high standard error? by Gordon Smyth 53k

Hi Julia, I am going to assume that you mean standard errors (SEs) returned by `dpcQuant()`, because later stages in the limpa pipeline …

Comment: gene Set with high AUC score but no cells assigned to cell type by e.j.aaw.g.erm • 0

It sounds like AUCell is struggling with thresholding because your cDC2 gene set doesn t show a clear bimodal distribution. While a high AU…

Comment: featureCounts -L: high unassigned:mapq fraction by insurancetaaddddaxrealty • 0

FeatureCounts can behave differently with ONT cDNA BAM files due to long read splice patterns, and many users compare settings or presets m…

Comment: A problem occurs when running the monocle2 by e.j.aaw.g.erm • 0

For gamers facing technical issues or errors in complex scripts, the Redz Hub script download provides a reliable tool to optimize performa…

Answer: How can I correctly use phyloseq with Docker? by Kevin Blighe ★ 4.0k

The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …

Votes

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

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