Bioconductor Splicing

Showing : Splicing • reset

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3.8k

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sgseq splicing alternative splicing

updated 9.9 years ago by Leonard Goldstein ▴ 260 • written 9.9 years ago by vakul.mohanty ▴ 20

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3.8k

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edger normalization differential exon usage splicing

updated 5.2 years ago by Yunshun Chen ▴ 900 • written 5.2 years ago by oakhamwolf • 0

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2.9k

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SGSeq analyzeFeatures Splicing

11.1 years ago Paolo Guarnieri ▴ 20

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1.7k

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DEXSeq Splicing Exon Usage

5.9 years ago gunjan.dikshit • 0

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2.2k

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microarray splicing

updated 10.0 years ago by Sonika Tyagi ▴ 20 • written 11.2 years ago by gv ▴ 30

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433

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splicing 5utr ORFik

updated 7 weeks ago by Kevin Blighe ★ 4.0k • written 5 months ago by luna.picello • 0

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2.1k

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DRIMSeq splicing differential isoform usage

updated 9.0 years ago by Gosia Nowicka ▴ 90 • written 9.0 years ago by kristoffer.vittingseerup ▴ 20

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2.1k

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genomicalignments splicing coverage

updated 6.3 years ago by Michael Lawrence ★ 11k • written 8.8 years ago by rasi1983 ▴ 10

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2.4k

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deseq2 splicing

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by yannickwurm • 0

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1.4k

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junctionseq splicing RNAseq DEXSeq

written 6.1 years ago by stuart ▴ 10

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1.5k

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splicing Exon featureCounts subread DEXSeq

3.6 years ago NIK • 0

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1.6k

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ciri splicing splicesites

updated 6.0 years ago by lhddiallo • 0 • written 7.7 years ago by csijst • 0

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1.2k

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splicing limma edgeR

updated 22 months ago by Gordon Smyth 53k • written 22 months ago by scoops_streams_06 • 0

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944

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transcriptome splicing assembly

updated 3.2 years ago by James W. MacDonald 68k • written 3.2 years ago by Marianna ▴ 20

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1.3k

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dexseq splicing sqtl qtl

updated 7.0 years ago by Alejandro Reyes ★ 1.9k • written 7.0 years ago by rtunney2 • 0

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1.2k

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

5.2 years ago noahhelton98 ▴ 20

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1.9k

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DEXSeq splicing python SAM

10.3 years ago Fiona ▴ 70

17 results • Page 1 of 1

Recent ...

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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k

Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…

Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k

Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…

Comment: Error in creating BSGenome package by Nguyen • 0

I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…

Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Votes

A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

Awards • All

Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Lluís Revilla Sancho ▴ 760

Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20