Bioconductor Splicing

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3.1k

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sgseq splicing alternative splicing

updated 8.9 years ago by Leonard Goldstein ▴ 260 • written 8.9 years ago by vakul.mohanty ▴ 20

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3.0k

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edger normalization differential exon usage splicing

updated 4.3 years ago by Yunshun Chen ▴ 900 • written 4.3 years ago by oakhamwolf • 0

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2.5k

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SGSeq analyzeFeatures Splicing

10.1 years ago Paolo Guarnieri ▴ 20

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2.0k

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microarray splicing

updated 9.0 years ago by Sonika Tyagi ▴ 20 • written 10.3 years ago by gv ▴ 40

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1.4k

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DEXSeq Splicing Exon Usage

5.0 years ago gunjan.dikshit • 0

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1.8k

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genomicalignments splicing coverage

updated 5.3 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by rasi1983 ▴ 10

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2.0k

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deseq2 splicing

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by yannickwurm • 0

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1.8k

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DRIMSeq splicing differential isoform usage

updated 8.0 years ago by Gosia Nowicka ▴ 90 • written 8.0 years ago by kristoffer.vittingseerup ▴ 20

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728

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transcriptome splicing assembly

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by Marianna ▴ 20

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1.3k

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ciri splicing splicesites

updated 5.0 years ago by lhddiallo • 0 • written 6.7 years ago by csijst • 0

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1.1k

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dexseq splicing sqtl qtl

updated 6.0 years ago by Alejandro Reyes ★ 1.9k • written 6.0 years ago by rtunney2 • 0

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1.0k

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junctionseq splicing RNAseq DEXSeq

5.2 years ago stuart ▴ 10

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1.1k

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splicing Exon featureCounts subread DEXSeq

2.7 years ago NIK • 0

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685

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splicing limma edgeR

updated 10 months ago by Gordon Smyth 52k • written 10 months ago by scoops_streams_06 • 0

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894

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.3 years ago noahhelton98 ▴ 20

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1.7k

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DEXSeq splicing python SAM

9.3 years ago Fiona ▴ 70

16 results • Page 1 of 1

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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k

If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Scholar to James W. MacDonald 68k