Bioconductor Svaseq

Showing : Svaseq • reset

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434

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DESeq2 Normalisation Bulkrnaseq Svaseq

5 months ago BioinfGuru ▴ 70

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819

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RUVSeq svaseq

2.3 years ago Tongjun • 0

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1.3k

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RNASeq sva svaseq

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by Bex • 0

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940

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limma sva Leafcutter SVAseq

3.1 years ago georgia.katsoula ▴ 40

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936

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sva svaseq surrogate variable analysis

updated 4.6 years ago by James W. MacDonald 67k • written 4.6 years ago by Mozart ▴ 30

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svaseq sva

5.6 years ago flippy23 • 0

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1.0k

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MEDIPS svaseq sva

updated 5.8 years ago by Lukas Chavez ▴ 570 • written 5.8 years ago by tofukaj • 0

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1.8k

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deseq2 svaseq

5.8 years ago bioinfo • 0

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1.7k

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edger sva svaseq limma

updated 6.5 years ago by Ryan C. Thompson ★ 7.9k • written 6.5 years ago by cats_dogs ▴ 20

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3.6k

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DESeq2 sva svaseq batch effect correction

6.8 years ago L_K • 0

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1.2k

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svaseq batcheffectcorrection

7.0 years ago burcu.atasu • 0

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1.7k

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ruvseq svaseq edaseq

updated 7.0 years ago by davide risso ▴ 980 • written 7.0 years ago by llo ▴ 10

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1.4k

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sva svaseq batch effect batch effects batch effect correction

7.2 years ago vedran.franke • 0

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1.9k

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deseq2 svaseq

updated 7.2 years ago by Michael Love 42k • written 7.3 years ago by gpalidwor ▴ 10

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2.0k

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sva svaseq

updated 7.4 years ago by Guido Hooiveld ★ 4.1k • written 7.4 years ago by wamiqsaifi • 0

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2.7k

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limma sva svaseq

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by Bogdan ▴ 670

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2.0k

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svaseq dexseq

updated 7.8 years ago by Alejandro Reyes ★ 1.9k • written 7.8 years ago by tofukaj • 0

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2.7k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 8.0 years ago by Jakub ▴ 50 • written 8.1 years ago by amoltej ▴ 10

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deseq2 svaseq

8.1 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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1.9k

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deseq2 sva svaseq

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by szenitha ▴ 20

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2.7k

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sva svaseq batcheffectcorrection

updated 8.3 years ago by Jeff Leek ▴ 650 • written 8.3 years ago by szenitha ▴ 20

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4.0k

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deseq2 sva svaseq pca

8.4 years ago Peter Alto ▴ 10

22 results • Page 1 of 1

Recent ...

Replies

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k