Showing : Transcription • reset
4
votes
0
replies
1.5k
views
News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
8.9 years ago Matthew Ritchie ▴ 1000
3
votes
0
replies
1.7k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
8.9 years ago • updated 8.7 years ago Matthew Ritchie ▴ 1000
1
vote
0
replies
1.3k
views
question on MotifDb package
Transcription MotifDb Transcription MotifDb
10.1 years ago Paul Shannon ▴ 470
1
vote
0
replies
921
views
Bioconductor for predicting transcription factors from a gene list?
transcription transcriptdb
7.0 years ago hkarakurt ▴ 20
1
vote
4
replies
1.5k
views
Is GO.db out of date?
Transcription GO Transcription GO
11.1 years ago chawla ▴ 190
1
vote
0
replies
1.5k
views
News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
7.8 years ago Matthew Ritchie ▴ 1000
1
vote
0
replies
1.1k
views
biomart Ensembl Regulatory Build
SNP Transcription biomaRt SNP Transcription biomaRt
12.9 years ago Fabrice Tourre ▴ 970
1
vote
4
replies
1.2k
views
DESeq2: Tests of log2 differences
deseq2 rna-seq transcription dgea
6.9 years ago fabian ▴ 40
1
vote
5
replies
2.2k
views
paCalls oligo package
Transcription oligo Transcription oligo
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 190
0
votes
2
replies
1.1k
views
clustering of genes
Transcription Clustering Cancer Transcription Clustering Cancer
updated 21.0 years ago by ★ 13k • written 21.0 years ago by 50k
0
votes
3
replies
1.3k
views
retrieving genomic sequences with biomaRt
Transcription biomaRt Transcription biomaRt
updated 17.6 years ago by ▴ 580 • written 17.6 years ago by ★ 1.9k
0
votes
1
reply
850
views
annotation - 1 probe with 2 UG ??
Transcription Annotation GO hgu133a probe Transcription Annotation GO hgu133a probe
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 300
0
votes
3
replies
2.3k
views
Gramene now available via biomaRt
SNP Transcription biomaRt Vega SNP Transcription biomaRt Vega
updated 7.5 years ago by • 0 • written 17.2 years ago by ▴ 580
0
votes
2
replies
944
views
Transcription factor binding site information
Transcription Transcription
17.0 years ago Ольга Камнева ▴ 90
0
votes
1
reply
1.7k
views
An. Gambie RNA-Seq differential expression using gage and pathview
Transcription Annotation Normalization gage pathview Transcription Annotation Normalization
updated 9.8 years ago by ▴ 20 • written 9.8 years ago by ★ 1.6k
0
votes
1
reply
1.5k
views
Differential expression analysis of CAGE data
Transcription Annotation convert edgeR DESeq Transcription Annotation convert edgeR DESeq
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ▴ 30
0
votes
0
replies
677
views
Q1, efficiency of experimental designs
Transcription Transcription
19.7 years ago Michael Gates ▴ 40
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.8 years ago by • 0 • written 11.1 years ago by ★ 8.2k
0
votes
4
replies
2.1k
views
BSgenomes vs ENSEMBL
Transcription Annotation BSgenome annotate Biostrings BSgenome Transcription Annotation
updated 15.5 years ago by 16k • written 15.5 years ago by ★ 3.9k
0
votes
2
replies
835
views
normalization
Transcription Microarray Transcription Microarray
updated 19.9 years ago by ▴ 920 • written 19.9 years ago by ▴ 90
0
votes
1
reply
897
views
TilingArray Normalization
Transcription Normalization probe tilingArray Transcription Normalization probe tilingArray
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ▴ 90
0
votes
2
replies
2.7k
views
How to retrieve 'conservation score' sequence?
Transcription biomaRt Transcription biomaRt
updated 15.4 years ago by ▴ 620 • written 15.4 years ago by ★ 3.9k
0
votes
0
replies
717
views
synergy / interaction analysis between gene transcript & correlation / what package to do this ?
Transcription Transcription
15.3 years ago Philippe Guardiola ▴ 10
0
votes
0
replies
1.0k
views
interaction analysis
Transcription Transcription
15.3 years ago Phguardiol@aol.com ▴ 720
0
votes
1
reply
1000
views
GSEA to discover co-regulated genes
Transcription Pathways Transcription Pathways
updated 15.3 years ago by 6.7k • written 15.3 years ago by ★ 1.3k
0
votes
0
replies
1.2k
views
Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
13.0 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.3k
views
GSEA to discover co-regulated genes
Transcription Annotation Pathways Infrastructure probe convert GSEABase Transcription
15.2 years ago Paul Geeleher ★ 1.3k
0
votes
0
replies
1.2k
views
interaction analysis
Transcription Microarray Network qpgraph Transcription Microarray Network qpgraph
15.2 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
971
views
Finding transcription factors controlling hk1 gene In timecourse experiment
Transcription TimeCourse affy timecourse Transcription TimeCourse affy timecourse
updated 15.0 years ago by ▴ 110 • written 15.0 years ago by ▴ 10
0
votes
2
replies
2.1k
views
PWM matching using matchPWM in Biostrings
Transcription BSgenome Biostrings BSgenome Transcription BSgenome Biostrings BSgenome
updated 14.9 years ago by ★ 1.6k • written 14.9 years ago by ▴ 10
0
votes
7
replies
2.1k
views
Low number of replicates DESeq
Transcription GO DESeq2 Transcription GO DESeq2
updated 10.2 years ago by 41k • written 10.2 years ago by ▴ 130
0
votes
3
replies
1.5k
views
matching transcription factor binding sites
Transcription Transcription
updated 16.1 years ago by 16k • written 16.1 years ago by ▴ 330
0
votes
3
replies
1.5k
views
R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Homo sapiens biomaRt Transcription miRNA Homo sapiens biomaRt
updated 14.6 years ago by ▴ 580 • written 14.6 years ago by ▴ 870
0
votes
1
reply
599
views
How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Transcription miRNA
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 870
0
votes
2
replies
1.0k
views
gDNA Cy3, cDNA Cy5
Transcription Biobase annotate Transcription Biobase annotate
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 270
0
votes
5
replies
1.3k
views
Problem reading in files with marrayInput
Transcription Cancer Transcription Cancer
updated 20.5 years ago by 65k • written 20.5 years ago by ★ 2.0k
0
votes
3
replies
1.4k
views
R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
14.6 years ago mauede@alice.it ▴ 870
0
votes
0
replies
724
views
General Transcription USD 0.42
Transcription Transcription
14.5 years ago prakashpatodia@cabbagetreesolutions.com ▴ 10
0
votes
1
reply
1.0k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 50
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.5 years ago by ▴ 430 • written 14.5 years ago by ▴ 410
0
votes
2
replies
1.5k
views
exon and transcription start site locations
Transcription GO Transcription GO
updated 14.4 years ago by ▴ 620 • written 14.4 years ago by ▴ 180
0
votes
1
reply
978
views
TSS Regions
Transcription IRanges Transcription IRanges
updated 14.4 years ago by ★ 4.3k • written 14.4 years ago by ▴ 130
0
votes
0
replies
989
views
Limma- deleting control probes from differential expression analysis
Transcription ASSIGN Transcription ASSIGN
14.4 years ago Neel Aluru ▴ 460
0
votes
5
replies
1.4k
views
from TF DNA binding motif to downstream genes?
Transcription Biostrings Transcription Biostrings
updated 14.3 years ago by ★ 1.6k • written 14.3 years ago by ★ 1.1k
0
votes
3
replies
1.1k
views
ChIPpeakAnno
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
14.2 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
968
views
concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 14.2 years ago by 21k • written 14.2 years ago by ★ 1.1k
0
votes
2
replies
1.4k
views
chip-seq data analysis
Transcription ChIPSeq Alignment chipseq Transcription ChIPSeq Alignment chipseq
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 60
0
votes
2
replies
1.1k
views
simple functional analysis of gene lists
Transcription GO convert Transcription GO convert
updated 14.1 years ago by ▴ 190 • written 14.1 years ago by ▴ 60
0
votes
0
replies
919
views
ChIPpeakAnno Paper - Example Dataset not found
Transcription ChIPSeq Annotation chipseq genomes Transcription ChIPSeq Annotation chipseq
13.8 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.2k
views
Job advertisement
Transcription Sequencing Microarray Normalization Pathways PROcess Transcription Sequencing
14.6 years ago Alexandre Kuhn ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards • All
Popular Question to Leo Lahti ▴ 40
Scholar to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Scholar to Michael Love 41k
Supporter to JKim • 0
Locations • All
France, 42 minutes ago
China, 46 minutes ago
India, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
EMBL Heidelberg, 1 hour ago
Traffic: 526 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6