Bioconductor Update

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Versions Update BindingSiteFinder

updated 15 months ago by Mike Smith ★ 6.5k • written 15 months ago by M.Klostermann • 0

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update Omixer maintainer

updated 3.4 years ago by shepherl 3.8k • written 3.4 years ago by l.j.sinke • 0

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1.3k

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software error packages update

updated 3.8 years ago by James W. MacDonald 65k • written 3.8 years ago by bs14ab • 0

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3.0k

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biocmanager valid update packages

updated 4.0 years ago by Kevin Blighe ★ 3.9k • written 4.0 years ago by bs14ab • 0

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660

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update new release version

4.6 years ago zzrickli • 0

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biocLite update all default ask

updated 5.2 years ago by Fischer-philipp ▴ 30 • written 5.2 years ago by rgiannico ▴ 10

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PANTHER.db update annotation go

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by alfonsosaera • 0

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792

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support.bioconductor.org update News

5.3 years ago shepherl 3.8k

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878

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bioclite package installation update

7.2 years ago Malcolm Cook ★ 1.6k

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2.0k

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installation update

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by debg • 0

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6.9k

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bioconductor biocupgrade upgrade update bioclite

8.0 years ago enricoferrero ▴ 660

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deseq2 update

9.3 years ago zshao1 • 0

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5.5k

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update bioclite

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by dianmante • 0

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experimentdata update

updated 9.6 years ago by Laurent Gatto 1.6k • written 9.6 years ago by paul.theodor.pyl ▴ 10

14 results • Page 1 of 1

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Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k

You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…

Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Votes

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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