Showing : arrayexpress • reset
6
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5
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3.2k
views
How to analyze correctly agilent two-colour microarray data from the ArrayExpress repository with the limma R package
agilent microarrays limma arrayexpress NChannelSet
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 830
4
votes
2
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1.3k
views
TargetsFile. Where it is?
Limma ArrayExpress GEO
updated 3.0 years ago by 65k • written 3.0 years ago by • 0
4
votes
5
replies
1.9k
views
time course microarray data ArrayExpress database
R GillespieColin ArrayExpress import TimeSeriesExperiment
updated 6 months ago by ▴ 40 • written 18 months ago by ▴ 20
4
votes
1
reply
1.6k
views
Mismatched ArrayExpress microarray annotation package
arrayexpress ArrayExpress hthgu133a.db
6.8 years ago sandmann.t ▴ 70
3
votes
6
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2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress xml rcurl http EBI
updated 6.6 years ago by ★ 13k • written 6.6 years ago by ▴ 610
3
votes
4
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2.9k
views
lm.fit incompatible dimensions
oligo arrayexpress limma
updated 4.2 years ago by • 0 • written 5.3 years ago by • 0
3
votes
2
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1.2k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
2
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1
reply
1.2k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 7.2 years ago by 65k • written 7.2 years ago by • 0
2
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3
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1.6k
views
Could not access the Bioconductor repository
bioconductor proxy arrayexpress
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
2
votes
3
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2.0k
views
ArrayExpress unable to find raw data: "Experiment has no raw files available"
arrayexpress
updated 7.4 years ago by ▴ 20 • written 7.4 years ago by ▴ 180
2
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2
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1.0k
views
limma - removing samples?
ArrayExpress limma arrays
3.0 years ago RMP87 • 0
2
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0
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1.2k
views
Fix for queryAE() in the ArrayExpress package
ArrayExpress ArrayExpress
11.1 years ago Ibrahim Emam ▴ 50
2
votes
2
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793
views
Simple queryAE command returning "Error: 1: Document is empty"
queryAE ArrayExpress
17 months ago alekeuro ▴ 10
1
vote
1
reply
1.1k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
1
vote
4
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2.0k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 6.0 years ago by 21k • written 6.0 years ago by ▴ 10
1
vote
1
reply
1.1k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.1 years ago by 50k • written 6.1 years ago by • 0
0
votes
2
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1000
views
About ArrayExpress MAGE-TAB tools
Microarray GEOquery ArrayExpress Microarray GEOquery ArrayExpress
updated 15.9 years ago by ▴ 280 • written 15.9 years ago by ▴ 450
0
votes
0
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1.3k
views
Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
12.5 years ago Claude Chelala ▴ 40
0
votes
1
reply
828
views
An importMAGEML problem in RMAGEML Package
RMAGEML ArrayExpress RMAGEML ArrayExpress
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Importing "Detailed sample annotation" from ArrayExpress DB into R
ArrayExpress ArrayExpress
15.7 years ago Markus Schmidberger ▴ 380
0
votes
0
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973
views
RMAGEML installation and ArrayExpress database
RMAGEML ArrayExpress RMAGEML ArrayExpress
15.7 years ago John Lande ▴ 280
0
votes
1
reply
833
views
About ArrayExpress MAGE-TAB tools
Microarray ArrayExpress Microarray ArrayExpress
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 2.0k
0
votes
0
replies
759
views
CEL files of ALL data set
ArrayExpress ArrayExpress
15.6 years ago Talloen, Willem [PRDBE] ▴ 10
0
votes
4
replies
1.0k
views
Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation Normalization Cancer limma ArrayExpress Annotation Normalization Cancer limma
updated 15.5 years ago by ▴ 30 • written 15.5 years ago by 50k
0
votes
0
replies
757
views
CEL files of ALL data set
ArrayExpress ArrayExpress
15.6 years ago Joern Toedling ▴ 730
0
votes
0
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1.0k
views
CAMDA08 Announcement. Deadline extension
Microarray ArrayExpress Microarray ArrayExpress
15.5 years ago Ana Conesa ▴ 340
0
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1
reply
1.0k
views
Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation Normalization GO Cancer limma ArrayExpress Annotation Normalization GO Cancer
updated 15.5 years ago by ▴ 280 • written 15.5 years ago by 50k
0
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0
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963
views
CAMDA conference program announcement / early booking discount until 12 Nov!
Microarray ArrayExpress Microarray ArrayExpress
15.5 years ago Dr. D. P. Kreil Boku ▴ 50
0
votes
1
reply
1.2k
views
ArrayExpress package error
ArrayExpress ArrayExpress
updated 15.4 years ago by ▴ 280 • written 15.4 years ago by ▴ 600
0
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5
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1.8k
views
Expressionset from ArrayExpress processed data
ArrayExpress SANTA ArrayExpress SANTA
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 20
0
votes
2
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1.3k
views
Limma - GenePix
ArrayExpress ArrayExpress
updated 14.8 years ago by ▴ 810 • written 14.8 years ago by ▴ 20
0
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5
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1.5k
views
Limma - GenePix
limma ArrayExpress limma ArrayExpress
updated 14.8 years ago by ▴ 810 • written 14.8 years ago by 50k
0
votes
0
replies
714
views
GenePix - Limma
ArrayExpress ArrayExpress
14.8 years ago Juana Arco ▴ 20
0
votes
0
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1.2k
views
How to use ExpressionSet for further Analysis
convert ArrayExpress convert ArrayExpress
14.8 years ago Md.Mamunur Rashid ▴ 260
0
votes
6
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1.8k
views
regarding package ArrayExpress
ArrayExpress ArrayExpress
updated 14.6 years ago by ▴ 280 • written 14.6 years ago by ▴ 70
0
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2
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2.2k
views
ArrayExpress as NChannelSet data into limma-compatible type
limma convert ArrayExpress SJava limma convert ArrayExpress SJava
updated 14.6 years ago by 25k • written 14.6 years ago by ▴ 60
0
votes
2
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1.1k
views
rma error on an affyBatch from ArrayExpress?
ArrayExpress ArrayExpress
updated 14.6 years ago by 25k • written 14.6 years ago by ▴ 90
0
votes
1
reply
1.1k
views
How to get platform annotation in ExpressionSet object
Annotation ArrayExpress Annotation ArrayExpress
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 30
0
votes
1
reply
1.1k
views
ArrayExpress error attaching phenodata
ArrayExpress ArrayExpress
updated 14.4 years ago by ▴ 280 • written 14.5 years ago by ★ 1.3k
0
votes
2
replies
959
views
Annotating Illumina Data from ArrayExpress
convert ArrayExpress convert ArrayExpress
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ▴ 260
0
votes
0
replies
724
views
Hapmap miRNA expression data
miRNA HapMap ArrayExpress miRNA HapMap ArrayExpress
14.4 years ago Paul Geeleher ★ 1.3k
0
votes
3
replies
1.2k
views
Reg: normalization of ArrayExpress data
Microarray Normalization GO ArrayExpress Microarray Normalization GO ArrayExpress
14.1 years ago Rohit Farmer ▴ 170
0
votes
1
reply
951
views
Query regarding GEO Database
ArrayExpress ArrayExpress
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 120
0
votes
1
reply
804
views
Unable to get the Platform Table using fData on eset object
ArrayExpress ArrayExpress
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 30
0
votes
0
replies
815
views
ArrayExpress User Survey
ArrayExpress ArrayExpress
14.0 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
948
views
Reg: Reading SMD data using ArrayExpress pacakage
ArrayExpress ArrayExpress
updated 13.9 years ago by ▴ 60 • written 13.9 years ago by ▴ 170
0
votes
1
reply
922
views
Reading SMD data in limma
limma ArrayExpress limma ArrayExpress
updated 13.9 years ago by ▴ 90 • written 13.9 years ago by ▴ 170
0
votes
2
replies
1.1k
views
Reading SMD data in limma
limma ArrayExpress limma ArrayExpress
13.9 years ago Gordon Smyth 50k
0
votes
2
replies
1.9k
views
ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 110
0
votes
2
replies
1.3k
views
Problem importing ArrayExpress data for custom array into BioConductor
Microarray cdf ArrayExpress Microarray cdf ArrayExpress
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 10
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
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