Showing : bayesian • reset
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 18 months ago by 53k • written 7.1 years ago by ▴ 10
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
7.6 years ago floriandeckert ▴ 30
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2.0k
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Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 7.7 years ago by ▴ 10 • written 7.7 years ago by ▴ 10
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2
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1.8k
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
BASiCS bayesian single cell scrnaseq
updated 7.7 years ago by ▴ 10 • written 7.7 years ago by ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
13.1 years ago Porterfield, Toni ▴ 10
7
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How does limma t-test work?
Bayesian limma Bayesian limma
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 160
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nem package, nem.BN learning with 'continuous_Baysian' not possible
Network Bayesian nem Network Bayesian nem
13.3 years ago Siebourg Juliane ▴ 10
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
13.6 years ago Dan Tenenbaum ★ 8.2k
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6
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7.7k
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 13.7 years ago by ▴ 290 • written 13.7 years ago by ★ 2.0k
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Help baySeq
Bayesian edgeR Bayesian edgeR
13.7 years ago Tina Asante Boahene ▴ 100
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2.6k
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TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization Bayesian edgeR baySeq DESeq Normalization Bayesian edgeR baySeq DESeq
updated 14.0 years ago by ▴ 40 • written 14.0 years ago by 53k
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Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 20
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1.6k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
14.0 years ago shirley zhang ★ 1.0k
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10
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2.4k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 14.0 years ago by 6.7k • written 14.0 years ago by ★ 2.0k
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3
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1.5k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 14.0 years ago by ★ 4.2k • written 14.0 years ago by ★ 2.0k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
14.0 years ago Richard Friedman ★ 2.0k
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RELATED TO CLUSTERING
Bayesian Bayesian
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 50
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1.4k
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
14.3 years ago Richard Friedman ★ 2.0k
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2.5k
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Rgraphviz plot of bnlearn object with text too big
Network Bayesian Rgraphviz Network Bayesian Rgraphviz
14.4 years ago João Daniel Nunes Duarte ▴ 30
4
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Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
updated 6 months ago by • 0 • written 14.5 years ago by ★ 2.0k
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1.4k
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Filtering out tags with low counts in DESeq and EgdeR?
Bayesian limma edgeR DESeq Bayesian limma edgeR DESeq
14.5 years ago Xiaohui Wu ▴ 280
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1.5k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
14.7 years ago Santosh Patnaik ▴ 30
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1.7k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.1 years ago Martin Morgan 25k
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Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
15.2 years ago Orfe, Lisa ▴ 20
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1.3k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.2 years ago Gordon Smyth 53k
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1.2k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.2 years ago Orfe, Lisa ▴ 20
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19k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
15.4 years ago David Lyon ▴ 340
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2
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1.4k
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 15.7 years ago by ▴ 190 • written 15.7 years ago by ▴ 10
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
15.8 years ago M. Carmen Ruiz de Villa ▴ 10
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
16.0 years ago Patrick Aboyoun ★ 1.6k
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1.4k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
16.4 years ago Mark Robinson ★ 1.1k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
16.7 years ago Kellie J. Archer, Ph.D. ▴ 120
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.0 years ago Patrick Aboyoun ★ 1.6k
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1
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1.6k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.5 years ago by ★ 1.6k • written 17.5 years ago by 25k
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Questions of package "deal"
Network Bayesian Network Bayesian
17.6 years ago Tu Kang ▴ 20
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
17.8 years ago Jean Yee Hwa Yang ▴ 130
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1.6k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.1 years ago Hervé Pagès 16k
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Problem when comparing a large experimental group versus a small control group by using SAM
Bayesian Bayesian
18.2 years ago Naomi Altman ★ 6.0k
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2
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1.5k
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analysis with no replication
Bayesian limma Bayesian limma
updated 18.4 years ago by ▴ 390 • written 18.4 years ago by ▴ 450
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1.4k
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.5 years ago Seth Falcon ★ 7.4k
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1.6k
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adjusted p values of the genes in the intersection of Venn
Bayesian limma Bayesian limma
19.0 years ago Gordon Smyth 53k
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2.2k
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
19.2 years ago Gordon Smyth 53k
0
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3
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1.8k
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Bayesian networks in BioC
Bayesian Bayesian
updated 19.5 years ago by ★ 2.4k • written 19.5 years ago by ▴ 320
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PhD Student Position in Statistics on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
19.5 years ago Ivo Kwee ▴ 30
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1.4k
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PhD Student Position in Statistics in Switzerland on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
19.6 years ago Ivo Kwee ▴ 30
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3
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3.1k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.7 years ago McGee, Monnie ▴ 300
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3
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2.1k
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
19.7 years ago Pete ▴ 70
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1.2k
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help with bayesian network
Network Bayesian Network Bayesian
20.1 years ago goldoni ▴ 10
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0
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1.6k
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CyberT: Paired Bayes t-test (Bayes corrected p-values)
Normalization Bayesian Normalization Bayesian
20.4 years ago Gordon Smyth 53k
0
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0
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1.2k
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identify gene expression markers using Bayesian
Bayesian Bayesian
21.2 years ago Liu, Xin ▴ 130
61 results • Page 1 of 2
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Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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