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bed
•
reset
4
votes
5
replies
5.6k
views
Convert an R data.frame to a bed file in R
rtracklayer
R
bed
updated 16 months ago by
Walters
• 0 • written 21 months ago by
L
▴ 50
9
votes
9
replies
5.4k
views
Importing a BED file with floating point scores?
rtracklayer
bed
updated 3.3 years ago by
merv
▴ 120 • written 8.1 years ago by
Ryan C. Thompson
★ 7.9k
1
vote
4
replies
2.6k
views
rtracklayer::import()-ing .bed.gz files from a URL
rtracklayer
import
bed
updated 8.2 years ago by
Michael Lawrence
★ 11k • written 8.2 years ago by
Peter Hickey
▴ 740
0
votes
2
replies
2.1k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.2 years ago
mjsduncan
• 0
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.4 years ago
Andy91
▴ 60
0
votes
1
reply
1.6k
views
Plot per-base-coverage output of a bed file of whole genome
coverage
bed
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
sgupt46
• 0
0
votes
1
reply
1.5k
views
comparing 2 long BED files in R in an efficient way
bed
vcf
updated 5.9 years ago by
GENOMIC_region
• 0 • written 5.9 years ago by
Bogdan
▴ 670
2
votes
3
replies
1.4k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.3 years ago
rbronste
▴ 60
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.5 years ago
Dimitris Polychronopoulos
▴ 80
5
votes
2
replies
1.3k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.4 years ago
wcstcyx
▴ 30
0
votes
7
replies
1.2k
views
rtracklayer cannot export empty BED file
rtracklayer
bed
genomicranges
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
foehn
▴ 100
3
votes
4
replies
1.2k
views
Convert a bed file to bigBed with rtracklayer
bed
bigBed
rtracklayer
ucsc
18 months ago
L
▴ 50
1
vote
2
replies
1.2k
views
Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
rtracklayer
bed
software error
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
3
replies
977
views
Error when using "readTranscriptFeatures" in "Genomation" R package for loading the bed file
readTranscriptFeatures
R
genomation
bed
updated 16 months ago by
James W. MacDonald
65k • written 16 months ago by
sat
• 0
0
votes
1
reply
903
views
Change the interval of bed file
mappability
bed
python
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
the
• 0
0
votes
0
replies
791
views
Plotting bed8 with Sushi possible?
sushi
bed
5.6 years ago
maltethodberg
▴ 180
16 results • Page
1 of 1
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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