Showing : biomart • reset
2
votes
4
replies
19k
views
biomaRt has encountered an unexpected server error.
biomaRt
updated 2.9 years ago by • 0 • written 5.1 years ago by • 0
5
votes
8
replies
18k
views
Ensembl site unresponsive
ensembl biomart
updated 4.1 years ago by • 0 • written 4.6 years ago by ▴ 50
13
votes
8
replies
17k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 10.6 years ago by ▴ 800 • written 10.6 years ago by ▴ 90
3
votes
4
replies
16k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
7.2 years ago Yuqia • 0
12
votes
10
replies
15k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 13 months ago by • 0 • written 18 months ago by ▴ 20
5
votes
4
replies
15k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 22 months ago by 68k • written 4.7 years ago by • 0
3
votes
3
replies
14k
views
How to find rsID with biomaRt in R
biomaRt
updated 15 months ago by 68k • written 4.2 years ago by ▴ 10
21
votes
24
replies
14k
views
Problem with biomart's listMarts function
biomart bug
updated 9.0 years ago by ▴ 470 • written 9.5 years ago by ★ 2.1k
2
votes
4
replies
14k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 9.8 years ago by ▴ 760 • written 10.0 years ago by ▴ 30
1
vote
8
replies
12k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 5.1 years ago by 68k • written 5.2 years ago by ▴ 10
2
votes
3
replies
12k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 10.5 years ago by ▴ 800 • written 10.5 years ago by ▴ 120
5
votes
2
replies
11k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 20
1
vote
2
replies
11k
views
Error in UseMethod("filter_") : no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', …
ErrorinUseMethod("filter_") biomaRt
updated 4.4 years ago by • 0 • written 4.4 years ago by ▴ 10
22
votes
15
replies
11k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 18 months ago by ▴ 10 • written 3.1 years ago by ▴ 50
21
votes
34
replies
11k
views
Biomart error when updating to R 4.0.2
Biomart
updated 4.6 years ago by ★ 6.6k • written 4.6 years ago by ▴ 40
8
votes
5
replies
10k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 5 months ago by • 0 • written 3.0 years ago by ▴ 50
0
votes
3
replies
10k
views
[biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes
biomaRt biomaRt
updated 12.0 years ago by ▴ 540 • written 12.0 years ago by ▴ 20
1
vote
6
replies
10k
views
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq r biomart
updated 9.5 years ago by ★ 2.1k • written 9.5 years ago by ▴ 40
0
votes
2
replies
9.6k
views
biomaRt proxy issues
biomaRt biomaRt
updated 10.9 years ago by ▴ 30 • written 10.9 years ago by ▴ 680
6
votes
19
replies
9.3k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
10.6 years ago k.askland ▴ 20
6
votes
5
replies
9.2k
views
biomaRt: error using useDataset or useMart
software error biomart usemart usedataset
updated 7.4 years ago by ★ 6.6k • written 7.4 years ago by ▴ 40
3
votes
3
replies
9.2k
views
BiomaRt::getBM Error in UseMethod(filter_)
biomaRt
4.5 years ago suyang • 0
2
votes
4
replies
8.7k
views
Something wrong with the BioMart server
bioMart
updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by • 0
2
votes
1
reply
8.7k
views
using biomaRt to look up human gene symbols and map them to human ensembl ENSG IDs
biomaRt
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
7
votes
6
replies
8.0k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 19 months ago by 700 • written 2.8 years ago by ▴ 20
7
votes
4
replies
7.8k
views
biomaRt question for GO term search
biomaRt GO term
updated 2.1 years ago by ★ 6.6k • written 5.9 years ago by ▴ 10
2
votes
11
replies
7.6k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 4.3 years ago by ★ 6.6k • written 4.6 years ago by • 0
4
votes
7
replies
7.5k
views
convert featureCounts's gene ID to entrez gene id
biomart rsubread gencode
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 20
0
votes
1
reply
7.2k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 14.1 years ago by ▴ 540 • written 14.1 years ago by ▴ 140
10
votes
5
replies
7.0k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
9.5 years ago anchel.gonzalez • 0
8
votes
5
replies
6.9k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 100
1
vote
7
replies
6.9k
views
Problems Installing biomaRt
biomaRt
updated 18 months ago by 68k • written 3.1 years ago by ▴ 20
1
vote
2
replies
6.8k
views
change the biomaRt host
biomaRt
updated 9.5 years ago by ▴ 140 • written 9.5 years ago by ▴ 100
6
votes
12
replies
6.6k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 8.1 years ago by • 0 • written 8.3 years ago by ▴ 110
0
votes
1
reply
6.5k
views
biomaRt getLDS server error
biomaRt Bioma
3.0 years ago floriandeckert ▴ 30
0
votes
1
reply
6.2k
views
Unable to use biomaRt because Rcurl doesn't pick up my proxy server address
biomaRt biomaRt
updated 18.9 years ago by ▴ 110 • written 18.9 years ago by ★ 3.4k
7
votes
2
replies
6.2k
views
getBM error: The query to the BioMart webservice returned an invalid result
biomart
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 30
9
votes
4
replies
6.1k
views
How to access Emsembl plants with biomaRt
biomart
9.5 years ago naholi.alejandri ▴ 50
19
votes
4
replies
6.0k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 9.5 years ago by ▴ 140 • written 9.5 years ago by ▴ 680
6
votes
7
replies
6.0k
views
BiomaRt workaround when Biomart server closed
biomart
updated 9.5 years ago by • 0 • written 9.5 years ago by ▴ 30
0
votes
3
replies
6.0k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
updated 2.7 years ago by • 0 • written 4.1 years ago by ▴ 20
5
votes
5
replies
6.0k
views
BiomaRt connection error: Could not connect to mysql database ensembl_mart_104
biomaRt connection sql
updated 3.9 years ago by ▴ 80 • written 3.9 years ago by ▴ 10
1
vote
2
replies
5.9k
views
biomaRt: getting start and end locations of gene on chromosome
GO biomaRt GO biomaRt
updated 15.9 years ago by 68k • written 15.9 years ago by ★ 1.1k
0
votes
2
replies
5.7k
views
biomaRt proxy issues
biomaRt charm biomaRt charm
updated 16.3 years ago by ▴ 600 • written 16.3 years ago by ▴ 60
0
votes
4
replies
5.7k
views
Problems Installing biomaRt
biomart linux
updated 4.4 years ago by 25k • written 7.1 years ago by • 0
3
votes
5
replies
5.7k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 11.7 years ago by ▴ 540 • written 11.7 years ago by ▴ 380
0
votes
2
replies
5.6k
views
How to solve operation timed out with biomaRt
biomaRt
updated 3.1 years ago by • 0 • written 4.2 years ago by ▴ 10
0
votes
5
replies
5.5k
views
Ensembl biomaRt connection errors
software error biomart ensembl
updated 8.9 years ago by ▴ 70 • written 8.9 years ago by • 0
1
vote
7
replies
5.5k
views
Using R BioMart getting orthologus genes between two species
biomaRt
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by • 0
2
votes
5
replies
5.5k
views
Error in getBM using biomaRt
biomaRt
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by ▴ 50
50 results • Page 1 of 1
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Replies
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k
Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.
Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k
The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…
Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0
I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…
Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k
Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …
Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0
It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…
Votes
Comment: Heatmap of a transformed deseq object with pheatmap
DESeq2: Question about the alpha in summary() and results()
Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
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