Showing : biomart • reset
13
votes
8
replies
16k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 9.8 years ago by ▴ 800 • written 9.8 years ago by ▴ 90
2
votes
4
replies
15k
views
biomaRt has encountered an unexpected server error.
biomaRt
updated 2.1 years ago by • 0 • written 4.3 years ago by • 0
5
votes
8
replies
14k
views
Ensembl site unresponsive
ensembl biomart
updated 3.3 years ago by • 0 • written 3.8 years ago by ▴ 50
3
votes
4
replies
14k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
6.4 years ago Yuqia • 0
2
votes
4
replies
13k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 9.0 years ago by ▴ 760 • written 9.2 years ago by ▴ 30
21
votes
24
replies
13k
views
Problem with biomart's listMarts function
biomart bug
updated 8.2 years ago by ▴ 470 • written 8.7 years ago by ★ 2.1k
2
votes
3
replies
11k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 9.7 years ago by ▴ 800 • written 9.7 years ago by ▴ 120
5
votes
4
replies
11k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 12 months ago by 66k • written 4.0 years ago by • 0
5
votes
2
replies
10k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 9.8 years ago by 66k • written 9.8 years ago by ▴ 20
3
votes
3
replies
10k
views
How to find rsID with biomaRt in R
biomaRt
updated 5 months ago by 66k • written 3.4 years ago by ▴ 10
1
vote
8
replies
9.9k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 4.3 years ago by 66k • written 4.4 years ago by ▴ 10
1
vote
2
replies
9.7k
views
Error in UseMethod("filter_") : no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', …
ErrorinUseMethod("filter_") biomaRt
updated 3.6 years ago by • 0 • written 3.6 years ago by ▴ 10
0
votes
3
replies
9.5k
views
[biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes
biomaRt biomaRt
updated 11.2 years ago by ▴ 540 • written 11.2 years ago by ▴ 20
0
votes
2
replies
9.4k
views
biomaRt proxy issues
biomaRt biomaRt
updated 10.1 years ago by ▴ 30 • written 10.1 years ago by ▴ 660
12
votes
10
replies
9.3k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 4 months ago by • 0 • written 9 months ago by ▴ 20
1
vote
6
replies
9.2k
views
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq r biomart
updated 8.7 years ago by ★ 2.1k • written 8.7 years ago by ▴ 40
21
votes
34
replies
8.9k
views
Biomart error when updating to R 4.0.2
Biomart
updated 3.8 years ago by ★ 6.5k • written 3.8 years ago by ▴ 40
3
votes
3
replies
8.5k
views
BiomaRt::getBM Error in UseMethod(filter_)
biomaRt
3.7 years ago suyang • 0
6
votes
19
replies
8.2k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
9.8 years ago k.askland ▴ 20
22
votes
15
replies
8.1k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 8 months ago by ▴ 10 • written 2.3 years ago by ▴ 50
6
votes
5
replies
8.1k
views
biomaRt: error using useDataset or useMart
software error biomart usemart usedataset
updated 6.6 years ago by ★ 6.5k • written 6.6 years ago by ▴ 40
2
votes
4
replies
7.9k
views
Something wrong with the BioMart server
bioMart
updated 5.2 years ago by ★ 6.5k • written 5.2 years ago by • 0
7
votes
5
replies
7.6k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 9 months ago by • 0 • written 2.2 years ago by ▴ 40
0
votes
1
reply
6.5k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 13.3 years ago by ▴ 540 • written 13.3 years ago by ▴ 140
2
votes
11
replies
6.5k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 3.5 years ago by ★ 6.5k • written 3.8 years ago by • 0
10
votes
5
replies
6.4k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
8.7 years ago anchel.gonzalez • 0
1
vote
2
replies
6.3k
views
change the biomaRt host
biomaRt
updated 8.7 years ago by ▴ 140 • written 8.7 years ago by ▴ 100
4
votes
7
replies
6.3k
views
convert featureCounts's gene ID to entrez gene id
biomart rsubread gencode
updated 5.8 years ago by 66k • written 5.8 years ago by ▴ 20
7
votes
4
replies
6.2k
views
biomaRt question for GO term search
biomaRt GO term
updated 16 months ago by ★ 6.5k • written 5.1 years ago by ▴ 10
0
votes
1
reply
6.0k
views
Unable to use biomaRt because Rcurl doesn't pick up my proxy server address
biomaRt biomaRt
updated 18.1 years ago by ▴ 110 • written 18.1 years ago by ★ 3.4k
7
votes
2
replies
5.9k
views
getBM error: The query to the BioMart webservice returned an invalid result
biomart
updated 6.5 years ago by ★ 6.5k • written 6.5 years ago by ▴ 30
19
votes
4
replies
5.7k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 8.7 years ago by ▴ 140 • written 8.7 years ago by ▴ 660
6
votes
12
replies
5.6k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 7.3 years ago by • 0 • written 7.5 years ago by ▴ 110
8
votes
5
replies
5.6k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 5.2 years ago by 66k • written 5.2 years ago by ▴ 100
0
votes
2
replies
5.5k
views
biomaRt proxy issues
biomaRt charm biomaRt charm
updated 15.5 years ago by ▴ 600 • written 15.5 years ago by ▴ 60
6
votes
7
replies
5.5k
views
BiomaRt workaround when Biomart server closed
biomart
updated 8.7 years ago by • 0 • written 8.7 years ago by ▴ 30
2
votes
1
reply
5.4k
views
using biomaRt to look up human gene symbols and map them to human ensembl ENSG IDs
biomaRt
updated 2.0 years ago by 66k • written 2.1 years ago by • 0
9
votes
4
replies
5.3k
views
How to access Emsembl plants with biomaRt
biomart
8.7 years ago naholi.alejandri ▴ 50
3
votes
5
replies
5.2k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 10.9 years ago by ▴ 540 • written 10.9 years ago by ▴ 380
1
vote
2
replies
5.1k
views
biomaRt: getting start and end locations of gene on chromosome
GO biomaRt GO biomaRt
updated 15.1 years ago by 66k • written 15.1 years ago by ★ 1.1k
1
vote
7
replies
5.0k
views
Problems Installing biomaRt
biomaRt
updated 8 months ago by 66k • written 2.3 years ago by ▴ 20
0
votes
2
replies
5.0k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 300
0
votes
2
replies
5.0k
views
problem with 'biomaRt' package installation: Error in loadNamespace(i, c(lib.loc, .libPaths()))
biomaRt biomaRt
updated 12.3 years ago by ★ 8.2k • written 12.3 years ago by ▴ 60
0
votes
2
replies
4.9k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
9.4 years ago mrprao • 0
7
votes
6
replies
4.9k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 9 months ago by 700 • written 23 months ago by ▴ 20
0
votes
7
replies
4.8k
views
Can't match on some, but not all, Illumina probe IDs using biomaRt
R biomart illumina human ht-12 v4
updated 8.6 years ago by ▴ 800 • written 8.6 years ago by • 0
0
votes
5
replies
4.8k
views
Ensembl biomaRt connection errors
software error biomart ensembl
updated 8.1 years ago by ▴ 70 • written 8.1 years ago by • 0
0
votes
1
reply
4.7k
views
how to map choromosome location to gene ID
biomaRt biomaRt
updated 13.2 years ago by ▴ 540 • written 13.2 years ago by ▴ 140
0
votes
1
reply
4.7k
views
biomaRt getLDS server error
biomaRt Bioma
2.2 years ago floriandeckert ▴ 30
0
votes
3
replies
4.6k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
updated 23 months ago by • 0 • written 3.3 years ago by ▴ 20
50 results • Page 1 of 1
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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