Showing : biseq • reset
0
votes
1
reply
1.0k
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
3.6 years ago thomas.koefoed • 0
0
votes
0
replies
1.1k
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
5.2 years ago i.s.castanho • 0
0
votes
1
reply
1.4k
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
5.2 years ago akhaira • 0
0
votes
1
reply
1.1k
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
5.2 years ago akhaira • 0
2
votes
8
replies
1.6k
views
Reason for NA in table after beta regression?
biseq beta regression
5.2 years ago akhaira • 0
0
votes
0
replies
713
views
What values to include for predictedMethNull in BiSeq
Biseq
5.3 years ago akhaira • 0
2
votes
10
replies
2.0k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
1
vote
0
replies
893
views
Understanding ColData in BiSeq
BiSeq Coldata
5.3 years ago akhaira • 0
0
votes
1
reply
973
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
5.4 years ago AishaD • 0
0
votes
1
reply
935
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
5.5 years ago i.s.castanho • 0
0
votes
0
replies
1.0k
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
6.7 years ago mira • 0
0
votes
1
reply
1.3k
views
Biseq installation error
biseq package installation r
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
votes
0
replies
1.2k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
7.1 years ago spr ▴ 10
0
votes
1
reply
1.4k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 7.8 years ago by 53k • written 7.8 years ago by • 0
0
votes
1
reply
1.4k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
8.5 years ago l.eijssen • 0
0
votes
3
replies
1.7k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 8.7 years ago by ▴ 130 • written 8.7 years ago by • 0
0
votes
6
replies
2.4k
views
BiSeq trimClusters error
biseq error trimClusters
updated 9.6 years ago by ▴ 130 • written 9.7 years ago by • 0
1
vote
0
replies
2.0k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.8 years ago enricoferrero ▴ 680
4
votes
4
replies
2.3k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 460
1
vote
2
replies
3.0k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.9 years ago by ★ 6.5k • written 9.9 years ago by ▴ 680
2
votes
15
replies
4.2k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.5 years ago • updated 10.4 years ago mnaymik ▴ 10
0
votes
5
replies
2.6k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
10.4 years ago maria.maqueda • 0
0
votes
3
replies
2.1k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 11.6 years ago by ▴ 130 • written 11.6 years ago by ▴ 330
23 results • Page 1 of 1
Recent ...
Replies
Answer: DiffBind - question on the use of filtered or unfiltered input data by vejogos850 • 0
DiffBind - question on the use of filtered or unfiltered input data is the best to deal with, and it provides us the solutions that we are …
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Aaron Lun ★ 29k
Popular Question to Alex • 0
Popular Question to Simon Pearce • 0
Popular Question to hauken_heyken ▴ 80
Locations • All
United Kingdom, 49 minutes ago
The city by the bay, 3 hours ago
Copenhagen, DK, 4 hours ago
United States, 11 hours ago
San Diego, 11 hours ago
Traffic: 2006 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6