Showing : biseq • reset
0
votes
1
reply
1.1k
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
3.8 years ago thomas.koefoed • 0
0
votes
0
replies
1.1k
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
5.4 years ago i.s.castanho • 0
0
votes
1
reply
1.4k
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
5.4 years ago akhaira • 0
0
votes
1
reply
1.1k
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
5.4 years ago akhaira • 0
2
votes
8
replies
1.7k
views
Reason for NA in table after beta regression?
biseq beta regression
5.4 years ago akhaira • 0
0
votes
0
replies
746
views
What values to include for predictedMethNull in BiSeq
Biseq
5.4 years ago akhaira • 0
2
votes
10
replies
2.1k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
1
vote
0
replies
937
views
Understanding ColData in BiSeq
BiSeq Coldata
5.5 years ago akhaira • 0
0
votes
1
reply
1.0k
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
5.5 years ago AishaD • 0
0
votes
1
reply
988
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
5.7 years ago i.s.castanho • 0
0
votes
0
replies
1.1k
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
6.8 years ago mira • 0
0
votes
1
reply
1.3k
views
Biseq installation error
biseq package installation r
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
0
votes
0
replies
1.3k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
7.3 years ago spr ▴ 10
0
votes
1
reply
1.5k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 7.9 years ago by 53k • written 7.9 years ago by • 0
0
votes
1
reply
1.5k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
8.7 years ago l.eijssen • 0
0
votes
3
replies
1.8k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 8.9 years ago by ▴ 130 • written 8.9 years ago by • 0
0
votes
6
replies
2.4k
views
BiSeq trimClusters error
biseq error trimClusters
updated 9.8 years ago by ▴ 130 • written 9.9 years ago by • 0
1
vote
0
replies
2.0k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
10.0 years ago enricoferrero ▴ 680
4
votes
4
replies
2.4k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 460
1
vote
2
replies
3.1k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 10.1 years ago by ★ 6.5k • written 10.1 years ago by ▴ 680
2
votes
15
replies
4.3k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.6 years ago • updated 10.5 years ago mnaymik ▴ 10
0
votes
5
replies
2.6k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
10.6 years ago maria.maqueda • 0
0
votes
3
replies
2.1k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 11.8 years ago by ▴ 130 • written 11.8 years ago by ▴ 330
23 results • Page 1 of 1
Recent ...
Replies
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to k___ ▴ 30
Popular Question to efoss ▴ 10
Popular Question to James W. MacDonald 68k
Locations • All
Russia, 31 minutes ago
United States, 31 minutes ago
United States, 35 minutes ago
United States, 37 minutes ago
United States, 49 minutes ago
Traffic: 698 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6