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cgh
•
reset
0
votes
1
reply
1.1k
views
array CGH software
CGH
CGH
written 18.2 years ago by
Igor Wojciechowski
▴ 10
1
vote
2
replies
2.8k
views
Columns used by read.maimages for Agilent arrays
Annotation
CGH
limma
13.2 years ago • updated 8.0 years ago
Gordon Smyth
53k
2
votes
3
replies
1.6k
views
read.maimages
Annotation
CGH
limma
Annotation
CGH
limma
updated 8.0 years ago by
Gordon Smyth
53k • written 13.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
980
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
8.4 years ago
kitcurtius
• 0
5
votes
3
replies
2.0k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 8.5 years ago by
Marcel Ramos
700 • written 9.2 years ago by
Sean Davis
21k
0
votes
0
replies
1.1k
views
problem in doing aCGH+SNP analysis
cgh
10.5 years ago
kajayh
• 0
0
votes
1
reply
1.8k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray
Annotation
CGH
snapCGH
Microarray
Annotation
CGH
snapCGH
updated 11.2 years ago by
Sean Davis
21k • written 11.2 years ago by
Guest User
★ 13k
0
votes
0
replies
962
views
analyses of CGH data
Microarray
CGH
Microarray
CGH
12.0 years ago
Isha Pandey Phd Scholar BITS Pilani Cam…
▴ 10
0
votes
0
replies
1.5k
views
Chr Info for array CGH - agilent 60K
CGH
CGH
12.1 years ago
Cian Murphy
▴ 40
0
votes
0
replies
1.1k
views
snapCGH and clonesinfo
CGH
limma
snapCGH
CGH
limma
snapCGH
12.3 years ago
Juliet Hannah
▴ 360
0
votes
1
reply
1.6k
views
CNTools error message
CGH
probe
DNAcopy
CGH
probe
DNAcopy
updated 13.7 years ago by
Martin Morgan
25k • written 13.7 years ago by
nac
▴ 280
0
votes
1
reply
1.6k
views
CGHweb and cghFLasso
CGH
CGH
updated 14.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.1 years ago by
Chris Fenton
▴ 80
0
votes
3
replies
2.8k
views
Script to save plots in Pdf format ( DNAcopy)
CGH
PROcess
CGH
PROcess
updated 14.5 years ago by
Thomas Hampton
▴ 750 • written 14.5 years ago by
nac
▴ 280
0
votes
0
replies
1.8k
views
seeking advice on analyzing CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
14.9 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
1.1k
views
how to import Agilent CGH custom design xml file into limma
Normalization
CGH
probe
limma
Normalization
CGH
probe
limma
15.0 years ago
Sean Davis
21k
0
votes
1
reply
2.0k
views
how to import Agilent CGH custom design xml file into limma
aCGH
CGH
probe
aCGH
snapCGH
aCGH
CGH
probe
aCGH
snapCGH
updated 15.0 years ago by
Sean Davis
21k • written 15.0 years ago by
Jarek Bryk
▴ 110
0
votes
2
replies
1.6k
views
memory limit
CGH
trigger
CGH
trigger
updated 15.0 years ago by
Steve Lianoglou
★ 13k • written 15.0 years ago by
Noemi Andor
▴ 100
0
votes
1
reply
1.6k
views
aCGH...'Genomic events'
CGH
CGH
updated 15.1 years ago by
Sean Davis
21k • written 15.1 years ago by
BTIS Department
▴ 10
0
votes
1
reply
1.5k
views
limma Agilent Normalization
Normalization
CGH
Normalization
CGH
updated 15.3 years ago by
Sean Davis
21k • written 15.3 years ago by
Noemi Andor
▴ 100
0
votes
0
replies
1.2k
views
CGHcall problem
CGH
CGHcall
CGH
CGHcall
15.5 years ago
Erik Dassi
▴ 10
0
votes
2
replies
1.8k
views
Nimblegen CGH ringo to snapCGH
CGH
snapCGH
Ringo
CGH
snapCGH
Ringo
updated 15.5 years ago by
Joern Toedling
▴ 450 • written 15.5 years ago by
Chris Fenton
▴ 80
0
votes
7
replies
1.8k
views
CGH analysis without genome positions
CGH
CGH
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
adam_pgsql
▴ 70
0
votes
1
reply
1.9k
views
CNV analysis with cghMCR/CNTools
GO
CGH
hgu133a
hgu95av2
GO
CGH
hgu133a
hgu95av2
updated 15.7 years ago by
John Zhang
★ 2.9k • written 15.7 years ago by
Tim Smith
★ 1.1k
0
votes
2
replies
1.6k
views
Calling genes present or absent in CGH data
CGH
limma
CGH
limma
updated 15.7 years ago by
Sean Davis
21k • written 15.7 years ago by
adam_pgsql
▴ 70
0
votes
0
replies
1.5k
views
Bioconductor 2.5 is released
Sequencing
miRNA
Microarray
qPCR
Annotation
Network
Bayesian
Regression
CGH
stam
Rintact
16.0 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
1.2k
views
problems with snapCGH readPositionalInfo processCGH
CGH
snapCGH
CGH
snapCGH
16.1 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.1k
views
rtracklayer browserView
CGH
rtracklayer
CGH
rtracklayer
16.1 years ago
Giulio Di Giovanni
▴ 540
0
votes
0
replies
1.3k
views
general CGH threshold question
aCGH
CGH
aCGH
GLAD
snapCGH
aCGH
CGH
aCGH
GLAD
snapCGH
16.1 years ago
Wolfgang RAFFELSBERGER
▴ 140
0
votes
1
reply
1.2k
views
NimbleGen HG18 CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
updated 16.2 years ago by
Sean Davis
21k • written 16.2 years ago by
Abcis
▴ 10
0
votes
0
replies
959
views
error in runBioHMM() (package snapCGH)
CGH
snapCGH
CGH
snapCGH
16.4 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
1
reply
1.1k
views
How to run bioHMM on Affymetrix data?
CGH
CGH
updated 16.5 years ago by
Oosting, J. PATH
▴ 550 • written 16.5 years ago by
Stacey Burrows
▴ 30
0
votes
2
replies
1.5k
views
How to display chromosome rapresentation ?
CGH
impute
CGH
impute
updated 16.6 years ago by
Sean Davis
21k • written 16.6 years ago by
Giulio Di Giovanni
▴ 540
0
votes
1
reply
1.3k
views
Where to download annotation package for Agilent human CGH 44B
Annotation
CGH
Annotation
CGH
updated 16.7 years ago by
Marc Carlson
★ 7.2k • written 16.7 years ago by
Daren Tan
▴ 190
0
votes
0
replies
1.2k
views
Annotation package for Agilent human CGH 44B
Annotation
CGH
Homo sapiens
Annotation
CGH
Homo sapiens
16.7 years ago
Daren Tan
▴ 190
0
votes
1
reply
1.6k
views
A CGH platform question
SNP
Genetics
Coverage
CGH
affy
SNP
Genetics
Coverage
CGH
affy
updated 16.8 years ago by
Henrik Bengtsson
★ 2.4k • written 16.8 years ago by
Johan Lindberg
▴ 70
0
votes
1
reply
967
views
CGH analysis in non-model organism
CGH
CGH
updated 16.9 years ago by
Sean Davis
21k • written 16.9 years ago by
Mingkwan Nipitwattanaphon
▴ 30
0
votes
5
replies
1.6k
views
quality assessment and preprocessing for tiling array-based CGH data
CGH
probe
CGH
probe
updated 17.0 years ago by
Sean Davis
21k • written 17.0 years ago by
Leon Yee
▴ 110
0
votes
0
replies
1.9k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP
Genetics
Pathways
Cancer
CGH
microRNA
SNP
Genetics
Pathways
Cancer
CGH
microRNA
17.0 years ago
Florian Markowetz
▴ 20
0
votes
1
reply
1.2k
views
normexp error (while using snapCGH)
CGH
snapCGH
CGH
snapCGH
updated 17.0 years ago by
Artur Veloso
▴ 340 • written 17.0 years ago by
Abhilash Venu
▴ 340
0
votes
1
reply
1.3k
views
Agilent Human Genome CGH 44K annotation
Annotation
Cancer
CGH
Annotation
Cancer
CGH
updated 17.1 years ago by
Sean Davis
21k • written 17.1 years ago by
Daniel Brewer
★ 1.9k
0
votes
9
replies
2.4k
views
gains and losses via mode shifting
Cancer
CGH
Cancer
CGH
17.3 years ago
Oscar Rueda
▴ 60
0
votes
0
replies
893
views
snapCGH package - processCGH
CGH
CGH
17.3 years ago
Henrique Proença
▴ 80
0
votes
5
replies
1.6k
views
gains and losses via mode shifting
CGH
CGH
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Benjamin Otto
▴ 830
0
votes
2
replies
1.4k
views
cross species CGH Nimblegene arrays
CGH
CGH
updated 17.4 years ago by
Alicia Oshlack
▴ 70 • written 17.4 years ago by
mb23
▴ 30
0
votes
0
replies
1.0k
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH
CGH
17.4 years ago
mb23
▴ 30
0
votes
2
replies
1.2k
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH
CGH
updated 17.4 years ago by
Sean Davis
21k • written 17.4 years ago by
mb23
▴ 30
0
votes
0
replies
1.5k
views
New Bioconductor package: rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
17.4 years ago
Michael Lawrence
▴ 620
0
votes
2
replies
1.2k
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH
CGH
updated 17.5 years ago by
Abhilash Venu
▴ 340 • written 17.5 years ago by
Sean Davis
21k
0
votes
0
replies
822
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH
CGH
17.5 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
array CGH - raw data analysis
CGH
CGH
updated 17.6 years ago by
Sean Davis
21k • written 17.6 years ago by
João Fadista
▴ 500
85 results • Page
1 of 2
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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