Bioconductor Cluster

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geneexp pheatmap heatmaps cluster

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by pehove2385 • 0

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965

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clusterProfiler cluster

10 months ago Yael • 0

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4.9k

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Network cluster WGCNA RNASeq

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by chiwut.wong • 0

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cluster clusterProfiler KEGG

23 months ago • updated 22 months ago ruba-mahmoud • 0

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cluster OrgDb clusterProfiler

written 2.4 years ago by Chruut • 0

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880

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cluster qpcr qpcrNorm clusterProfiler HTqPCR

2.4 years ago Javier • 0

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scran Clustering SingleCellExperiment annotate cluster

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by achoppe ▴ 10

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RNASeq Clustering cluster WGCNA

3.0 years ago chiwut.wong • 0

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biomaRt R cluster

updated 4.7 years ago by Martin Morgan 25k • written 4.7 years ago by camerond • 0

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SingleCellExperiment cluster identities sce

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by reinepapillon • 0

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909

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TCseq microwarray cluster counts normalization

5.7 years ago bioyas ▴ 10

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2.4k

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cluster mfuzz gene names

updated 9.0 years ago by Assa Yeroslaviz ★ 1.5k • written 9.0 years ago by thomas.dobrenel • 0

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1.4k

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quasr parallel cluster

9.2 years ago rna seq ▴ 90

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cluster

9.2 years ago niavarani ▴ 10

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cluster mclust limma clusplot kmeans

9.7 years ago svlachavas ▴ 840

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3.4k

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rnbeads gs ghostscript shared libraries cluster

9.7 years ago bmreilly • 0

16 results • Page 1 of 1

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Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Votes

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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