Showing : copynumber • reset
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copynumber package issue
copynumber
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
1
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3
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2.3k
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copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 4.2 years ago by ▴ 220 • written 4.4 years ago by • 0
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0
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903
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Is there a package that help me draw copy number alteration for each chromosome?
copynumber alteration
6.4 years ago Arman Shahrisa ▴ 20
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1.1k
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CopywriteR - low coverage-regions display very low numbers
copywriter copynumber
updated 6.5 years ago by ▴ 170 • written 6.5 years ago by • 0
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994
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Bug with interpolate.pcf.r from copynumber
copynumber
7.4 years ago aspergillus.cec • 0
0
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3
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2.1k
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Mapping regions to gene symbols
annotation R copynumber
updated 7.7 years ago by 6.7k • written 7.7 years ago by • 0
0
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1
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1.4k
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Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
7.9 years ago • updated 7.8 years ago shrirambhosle • 0
5
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3
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1.9k
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Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.9 years ago by 700 • written 8.6 years ago by 21k
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1.9k
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CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber cnvtools cnv copywriteR
updated 8.6 years ago by ▴ 170 • written 8.6 years ago by • 0
5
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9
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4.6k
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Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
9.3 years ago KB ▴ 50
1
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6
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2.4k
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Copy number analysis from Illumina 550K chip
illumina copynumber crlmm
9.4 years ago stuti.agrawal • 0
1
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1
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1.5k
views
Error genotyping with CRLMM
crlmm copynumber illumina
updated 9.4 years ago by ▴ 370 • written 9.4 years ago by • 0
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1
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1.6k
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NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm copynumber
10.0 years ago kforner • 0
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6
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2.8k
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crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 10.8 years ago by ▴ 1000 • written 10.8 years ago by ▴ 160
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2.3k
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crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 11.0 years ago by ▴ 1000 • written 11.0 years ago by ▴ 160
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1.2k
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calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
11.1 years ago Guest User ★ 13k
2
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1
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1.8k
views
DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 140
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7
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2.1k
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DNA-Methylation, CopyNumber Results
Normalization Cancer limma copynumber Normalization Cancer limma copynumber
14.5 years ago Ina Hoeschele ▴ 620
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Simple beadarraySNP analysis
SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer
15.8 years ago Dmitri Mouradov ▴ 20
0
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4
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1.7k
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Creating a new instance of oligoSnpSet
Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE
16.3 years ago Steven McKinney ▴ 310
0
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2
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1.4k
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 16.4 years ago by ▴ 110 • written 16.4 years ago by ▴ 40
0
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5
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2.2k
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Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization probe copynumber Normalization probe copynumber
updated 17.1 years ago by ★ 2.4k • written 17.1 years ago by ▴ 270
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2
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1.7k
views
Asymmetric colors for heatmap
copynumber copynumber
19.6 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
23 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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