Showing : correlation • reset
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Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 4 months ago by ★ 4.1k • written 6.1 years ago by • 0
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 5 months ago by • 0 • written 17 months ago by • 0
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WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 5 months ago by • 0 • written 2.4 years ago by • 0
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Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq Correlation DESeq2
updated 21 months ago by 42k • written 21 months ago by • 0
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spearman correlation
correlation sperarman
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by • 0
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WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.4 years ago by ▴ 730 • written 7.7 years ago by ▴ 40
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Best practice for correlating scRNA seq to bulkRNA seq data
seurat edgeR spearman correlation scRNAseq
updated 4.0 years ago by ★ 28k • written 4.0 years ago by ▴ 10
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Correlation plot how to improve?
plot correlation
4.5 years ago annkolman78 • 0
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Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2 correlation
5.5 years ago Cornwell, Adam ▴ 110
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Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
5.6 years ago faramer86 • 0
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How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
5.9 years ago adriana.gallego.02 ▴ 20
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Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 6.2 years ago by ★ 3.0k • written 6.2 years ago by ▴ 20
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Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by ▴ 20
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expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.0 years ago by • 0 • written 7.3 years ago by ▴ 10
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Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 7.1 years ago by ★ 5.2k • written 7.1 years ago by • 0
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plotting correlation between samples
correlation
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
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WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by ▴ 40
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4
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Correlation analysis taking into account multiple correlations
edger rna-seq correlation
updated 7.6 years ago by ▴ 270 • written 7.6 years ago by ▴ 10
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7
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How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 8.2 years ago by ★ 3.0k • written 8.2 years ago by ▴ 20
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Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2 correlation deseq linear
updated 8.7 years ago by ★ 7.9k • written 8.7 years ago by • 0
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Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.1 years ago by 21k • written 9.1 years ago by ★ 2.0k
21 results • Page 1 of 1
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
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Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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