Bioconductor De

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limma model.matrix de design rnaseq

updated 4.4 years ago by Gordon Smyth 51k • written 4.4 years ago by Will • 0

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batch effect limma rna seq DE

updated 4.5 years ago by Steve Lianoglou ★ 13k • written 4.5 years ago by svlachavas ▴ 830

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go de enrichment rnaseq goana

updated 4.6 years ago by Gordon Smyth 51k • written 4.6 years ago by Raito92 ▴ 60

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edger deseq2 rnaseq de

updated 4.6 years ago by Gordon Smyth 51k • written 4.6 years ago by Raito92 ▴ 60

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go DE edger rnaseq glmTreat

updated 4.6 years ago by Gordon Smyth 51k • written 4.6 years ago by Raito92 ▴ 60

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limma de differential gene expression multi-tissue design multi-level design

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by kdiamanti • 0

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deseq rna-seq filtering DE deseq2

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by svlachavas ▴ 830

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deseq2 nested de

updated 5.0 years ago by Michael Love 42k • written 5.0 years ago by gaio.transposon • 0

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sce markers single cell DE clusters

5.1 years ago ludmi.b • 0

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scRNA-seq Seurat DE

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by ilee8 • 0

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edger design matrix de

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by takumima ▴ 10

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deseq2 DE DEG

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by hermanapis • 0

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limma microarray hugeneST batch effect DE

updated 5.8 years ago by Ryan C. Thompson ★ 7.9k • written 5.8 years ago by svlachavas ▴ 830

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deseq2 DE

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by lkianmehr • 0

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ballgown R RNAseq DE interactions

updated 6.4 years ago by James W. MacDonald 67k • written 6.4 years ago by khill33 • 0

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DESeq2 DE normalization

7.3 years ago mario.keller.1988 ▴ 20

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limma DE

updated 7.7 years ago by svlachavas ▴ 830 • written 7.7 years ago by Dave • 0

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deseq2 DE rnaseq sva combat

updated 8.8 years ago by Michael Love 42k • written 8.8 years ago by mbio.kyle • 0

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monocle cummerbund DE rnaseq

updated 9.3 years ago by ksekine • 0 • written 9.6 years ago by Jon Bråte ▴ 260

19 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Votes

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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