Bioconductor Dna methylation

Showing : dna methylation • reset

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1.1k

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minfi cell proportion estimateCellCounts DNA Methylation

4.6 years ago grayapply2009 • 0

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2.2k

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normalization DNA methylation WGCNA

updated 5.4 years ago by Peter Langfelder ★ 3.0k • written 5.4 years ago by enora.fremy • 0

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1.1k

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medips medip-seq dna methylation dmr analysis

updated 5.9 years ago by Lukas Chavez ▴ 570 • written 5.9 years ago by mtefit • 0

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1.8k

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R gdc rna-seq dna methylation

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by RichardJActon ▴ 50

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1.4k

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minfi normalization outliers dna methylation densityplot

6.3 years ago peter.fransquet • 0

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865

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differential variability dna methylation iEVORA DVP

6.5 years ago poojitha.stemcell ▴ 10

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1.2k

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rnbeads methylation methylationepic dna methylation

6.7 years ago gabrielrfries • 0

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1.2k

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dna methylation biseq

updated 6.9 years ago by Gordon Smyth 51k • written 6.9 years ago by ahmad.moousavi • 0

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2.0k

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tcgabiolinks dna methylation

updated 6.9 years ago by Marcel Ramos 700 • written 6.9 years ago by michaelwxf2012 • 0

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1.8k

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dna methylation illimina 450k methylation beta M significance

updated 7.1 years ago by James W. MacDonald 67k • written 7.1 years ago by skids121 • 0

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1.3k

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CNV minfi preprocessing dna methylation

7.6 years ago Thomas • 0

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1.1k

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microarray HM450 dna methylation cohcap

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by poojitha.stemcell ▴ 10

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1.3k

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minfi bumphunter DNA methylation illumina450k

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

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Popular Question to Guido Hooiveld ★ 4.1k