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dna methylation
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0
votes
1
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1.1k
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
4.9 years ago
grayapply2009
• 0
1
vote
2
replies
2.5k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 5.7 years ago by
Peter Langfelder
★ 3.0k • written 5.7 years ago by
enora.fremy
• 0
1
vote
2
replies
1.2k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 6.2 years ago by
Lukas Chavez
▴ 570 • written 6.2 years ago by
mtefit
• 0
7
votes
7
replies
1.9k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 6.3 years ago by
Sean Davis
21k • written 6.3 years ago by
RichardJActon
▴ 50
1
vote
2
replies
1.5k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
6.6 years ago
peter.fransquet
• 0
0
votes
0
replies
903
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
6.8 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.2k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
7.0 years ago
gabrielrfries
• 0
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
2.1k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 7.2 years ago by
Marcel Ramos
700 • written 7.2 years ago by
michaelwxf2012
• 0
1
vote
1
reply
2.0k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 7.4 years ago by
James W. MacDonald
68k • written 7.4 years ago by
skids121
• 0
0
votes
0
replies
1.4k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
7.9 years ago
Thomas
• 0
1
vote
2
replies
1.2k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.3k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
fleur_p90
• 0
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Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I watched https://www.youtube.com/watch?v=npto50RJpDc and that shows some principles that are not followed in the markup for the tables at …
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I second the thanks for this post. I just tried the screen reader with macOS and see that the handling of our package tables is poor. How…
Comment: Web accessibility of Bioconductor.org
by
Michael Love
43k
hello. Thanks for your post, I'll post this also to the biocwebsite channel on the Bioconductor community slack. https://community-bioc.sl…
Answer: KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
by
Jessica
• 0
Nevermind. Just had to change to Uniprot IDs and it worked :)
Votes
Store Matrix in DataFrame Cell
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
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