Showing : dnacopy • reset
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306
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DNAcopy segment function not reproducible even when setting seed
DNAcopy
12 months ago BID • 0
0
votes
0
replies
912
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
18 months ago NewtoBioconductor • 0
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0
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663
views
do DNAcopy do copy number segmentation need separate between tumor samples and mormal samples
DNAcopy
3.2 years ago xingyu • 0
0
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1
reply
2.7k
views
BiocManager::install("DNAcopy") failed to install in r
DNAcopy R
updated 3.4 years ago by ★ 6.6k • written 3.4 years ago by • 0
0
votes
11
replies
1.9k
views
Create `Copy Number Array' Data Object error
DNAcopy
4.3 years ago El • 0
0
votes
3
replies
2.0k
views
"genomdat must be numeric"error in DNAcopy Package (Solved)
DNAcopy Varscan
updated 4.3 years ago by • 0 • written 7.1 years ago by • 0
0
votes
0
replies
794
views
don't get an output of wigtoRangedData's function HMMcopy Package for detect CNV
HMMcopy DNAcopy
4.3 years ago El • 0
2
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3
replies
1.8k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
0
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1
reply
2.9k
views
change plot title in DNAcopy multiple plot.type="s"
DNAcopy
updated 7.4 years ago by ▴ 690 • written 7.4 years ago by ▴ 60
0
votes
0
replies
985
views
plot multiple chromosomes from plot.type="c" to PDF files automatically in RStudio (RMD document)
dnacopy
7.4 years ago Stephane Plaisance | VIB | ▴ 60
0
votes
3
replies
1.8k
views
wrong output of DNAcopy::segment() for chr. with empty copy number data
DNAcopy dnacopy
7.6 years ago Alexandre Kuhn ▴ 20
0
votes
3
replies
1.9k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 7.7 years ago by ▴ 130 • written 7.7 years ago by • 0
1
vote
2
replies
1.6k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 8.1 years ago by ▴ 30 • written 8.1 years ago by ▴ 10
2
votes
4
replies
2.7k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 9.1 years ago by ▴ 170 • written 9.1 years ago by • 0
0
votes
2
replies
1.4k
views
could not find function "DNAcopy"
dnacopy
updated 9.1 years ago by 25k • written 9.1 years ago by • 0
0
votes
1
reply
1.7k
views
CNAnorm ploidy help
CNAnorm DNAcopy
updated 9.3 years ago by • 0 • written 9.3 years ago by ▴ 40
0
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0
replies
1.1k
views
Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
9.6 years ago Cian Murphy ▴ 40
0
votes
1
reply
1.5k
views
"genomdat must be numeric" error form DNACopy package
software error dnacopy crlmm
updated 9.7 years ago by 68k • written 9.8 years ago by • 0
0
votes
0
replies
1.6k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
10.2 years ago giovanni.dario • 0
1
vote
1
reply
1.4k
views
Installation of DNAcopy was absolutly done in R2.15?
installation dnacopy
10.3 years ago vov-x • 0
0
votes
4
replies
2.1k
views
DNACopy Question what is passed to the maploc argument.
DNAcopy DNAcopy
updated 10.6 years ago by ★ 6.8k • written 10.6 years ago by ▴ 30
0
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0
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1.2k
views
DNA Copy CNA function , what do you pass to maploc argument?
DNAcopy DNAcopy
10.6 years ago Nikolas Balanis ▴ 30
0
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3
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4.0k
views
Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ▴ 80
0
votes
0
replies
1.4k
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
11.6 years ago Guest User ★ 13k
0
votes
0
replies
1.4k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
11.7 years ago Guest User ★ 13k
0
votes
1
reply
1.9k
views
Error in sort(abs(diff(genomdat)))[1:n.keep]
DNAcopy DNAcopy
updated 11.8 years ago by ▴ 40 • written 11.8 years ago by ★ 13k
0
votes
3
replies
1.6k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ★ 3.0k
0
votes
1
reply
1.6k
views
Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 12.2 years ago by ▴ 210 • written 12.2 years ago by ★ 13k
0
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5
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2.0k
views
bioconductor on EMR / mapreduce
DNAcopy DNAcopy
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 70
0
votes
1
reply
1.7k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
13.0 years ago Ekta Jain ▴ 370
0
votes
1
reply
1.4k
views
DNAcopy for CNV in SNP Affy 6.0
DNAcopy DNAcopy
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 370
0
votes
0
replies
1.2k
views
aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
13.1 years ago Emilie Lalonde ▴ 10
0
votes
1
reply
1.5k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 280
0
votes
2
replies
1.4k
views
questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 280
0
votes
0
replies
1.2k
views
Fwd: seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
13.3 years ago nac ▴ 280
0
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0
replies
1.1k
views
seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
13.3 years ago nac ▴ 280
0
votes
0
replies
1.2k
views
Help on cghMCR units of gapAllowed
DNAcopy cghMCR DNAcopy cghMCR
13.3 years ago nac ▴ 280
0
votes
2
replies
1.9k
views
Tuning segment() in DNAcopy package to get more segments on each chromosome
DNAcopy UNDO DNAcopy UNDO
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 110
0
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0
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1.4k
views
cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess DNAcopy cghMCR PROcess DNAcopy cghMCR
13.5 years ago viritha kaza ▴ 580
0
votes
1
reply
1.6k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 13.5 years ago by ▴ 20 • written 13.5 years ago by ▴ 580
0
votes
1
reply
1.2k
views
DNAcopy segment() Infinite Loop
DNAcopy DNAcopy
updated 13.7 years ago by ▴ 40 • written 13.8 years ago by ★ 1.6k
2
votes
1
reply
1.8k
views
DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 140
0
votes
2
replies
1.6k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
13.8 years ago nac ▴ 280
0
votes
1
reply
1.1k
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
updated 13.8 years ago by ★ 13k • written 13.9 years ago by ▴ 280
0
votes
0
replies
915
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
13.9 years ago nac ▴ 280
0
votes
0
replies
982
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
13.9 years ago Chiho Kwon ▴ 10
0
votes
1
reply
1.2k
views
DNAcopy installation error
DNAcopy DNAcopy
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 10
0
votes
0
replies
1.3k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
15.1 years ago Daniel Rico ▴ 110
0
votes
0
replies
1.1k
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
15.2 years ago Anguraj Sadanandam ▴ 10
0
votes
2
replies
1.3k
views
Reproducibility of DNAcopy segmentation
DNAcopy DNAcopy
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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