Showing : geneplotter • reset
6
votes
5
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Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
0
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4
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1.7k
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[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
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2
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1.2k
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AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 30
0
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0
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1.8k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
16.8 years ago Min Wook Kim ▴ 20
0
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4
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2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
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2
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1.2k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 16.6 years ago by ▴ 540 • written 16.6 years ago by ★ 1.6k
0
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0
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961
views
Colors in cColor from geneplotter
probe geneplotter probe geneplotter
16.0 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
1.3k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 10
0
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0
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1.5k
views
peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
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1.2k
views
Bioconductor 1.0
Microarray Annotation Normalization Cancer genefilter geneplotter multtest ROC Microarray
22.1 years ago Anthony Rossini ▴ 530
0
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0
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910
views
Re: Bioconductor digest, Vol 1 #41 - 4 msgs
geneplotter multtest geneplotter multtest
22.0 years ago HYing ▴ 20
0
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0
replies
721
views
Problem with datasets (was: Re: Bioconductor digest, Vol 1 #41 - 4 msgs)
geneplotter multtest geneplotter multtest
22.0 years ago Laurent Gautier ★ 2.3k
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.3 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
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1.2k
views
contributing to Bioconductor
GO Clustering geneplotter GO Clustering geneplotter
21.2 years ago Wilkinson, Mark ▴ 60
0
votes
1
reply
879
views
[bioC] GenePlotter for mgu74v2
GO Cancer mgu74a mgu74av2 geneplotter GO Cancer mgu74a mgu74av2 geneplotter
updated 21.1 years ago by ★ 5.5k • written 21.1 years ago by ★ 2.9k
0
votes
1
reply
822
views
using geneplotter with my own data
geneplotter geneplotter
updated 21.0 years ago by ★ 3.9k • written 21.0 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 21.0 years ago by ★ 2.9k • written 21.0 years ago by ▴ 130
0
votes
1
reply
777
views
Help using annotation data without explicitly building data package
Annotation geneplotter Annotation geneplotter
updated 20.6 years ago by 6.7k • written 20.6 years ago by 21k
0
votes
0
replies
524
views
Suggestion to geneplotter vignette
Annotation geneplotter Annotation geneplotter
20.2 years ago Palle Villesen ▴ 10
0
votes
0
replies
741
views
geneplotter and base position
Annotation geneplotter affy Annotation geneplotter affy
20.0 years ago david neil hayes ▴ 70
0
votes
1
reply
869
views
Plotting together data from hgu133a and b
hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 500
0
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0
replies
1.0k
views
Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Goeman, J.J. MSTAT ▴ 150
0
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0
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1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago rgentleman ★ 5.5k
0
votes
2
replies
1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 130
0
votes
2
replies
1.7k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 19.5 years ago by ▴ 680 • written 19.5 years ago by ▴ 10
0
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0
replies
839
views
Affy: chromosomal localization with expression value for of gene lists
Cancer geneplotter Cancer geneplotter
19.3 years ago John Zhang ★ 2.9k
0
votes
2
replies
892
views
greenred.colors() in geneplotter
geneplotter geneplotter
19.3 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.4k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 19.2 years ago by ★ 13k • written 19.2 years ago by ▴ 540
0
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0
replies
1.1k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.2 years ago Yi, Andrew ▴ 20
0
votes
1
reply
948
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.1 years ago by 21k • written 19.1 years ago by ▴ 30
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0
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1.3k
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Re: Defining your own chromosome annotations
Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder
19.1 years ago Palmer, Lance ▴ 30
0
votes
12
replies
2.0k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.5 years ago by ★ 5.5k • written 17.5 years ago by ▴ 460
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 70
0
votes
1
reply
975
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
votes
1
reply
830
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
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0
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1.6k
views
Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
17.2 years ago Tarca, Adi ▴ 570
0
votes
1
reply
1.4k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.2 years ago by 66k • written 17.2 years ago by ★ 2.2k
0
votes
2
replies
1.7k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.2 years ago by ▴ 680
0
votes
0
replies
1.2k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.1 years ago stephen edwards ▴ 10
0
votes
4
replies
2.2k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 17.0 years ago by ★ 1.9k • written 17.0 years ago by ▴ 250
0
votes
3
replies
1.2k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 160
0
votes
1
reply
1.2k
views
beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 16.9 years ago by ▴ 460 • written 16.9 years ago by ▴ 10
0
votes
1
reply
1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.9 years ago Steven McKinney ▴ 310
0
votes
3
replies
1.6k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 40 • written 16.8 years ago by ▴ 270
0
votes
1
reply
1.4k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 320 • written 16.8 years ago by ▴ 410
0
votes
1
reply
1.2k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 320 • written 16.8 years ago by ▴ 270
0
votes
6
replies
3.4k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.8 years ago by ▴ 220 • written 16.8 years ago by ★ 2.2k
50 results • Page 1 of 1
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Comment: Slightly different count plots from R and spreadsheet by boczniak767 ▴ 720
Thank you, but now I have six black and six red boxes (3 black, 3 red, 3 black, 3 red) whereas for each timepoint I have two experimental v…
Comment: Slightly different count plots from R and spreadsheet by Michael Love 42k
I added `col` so you can see the different groups. I just want you to be able to see the raw data so you can infer which plot is correct.
Comment: Slightly different count plots from R and spreadsheet by boczniak767 ▴ 720
Thank you, the code you provided gives boxplots for each data-point for pooled samples?
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by xuz • 0
Could you try the following code and see whether you have any errors mf="MouseMethylation-12v1-0_A2.csv" manifest=readmanifest(mf) What …
Answer: Slightly different count plots from R and spreadsheet by Michael Love 42k
I'm gonna guess something went wrong in libreoffice. Try also ``` with(prb1, plot(timepoint, count, col=as.integer(ln))) ```
Votes
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
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Centurion to boczniak767 ▴ 720
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