Bioconductor Genes

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912

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DESeq2 genes Differential expressed

2.7 years ago Syed Zaheer ▴ 10

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1.8k

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GeneSetEnrichment genes genetogo

updated 3.6 years ago by Basti ▴ 780 • written 3.6 years ago by Noy • 0

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1.0k

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R microRNA genes binding Site

6.5 years ago pengu447 • 0

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2.0k

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edger differential expression genes fold change

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by ilovesuperheroes1993 • 0

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1.2k

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deseq2 genes expression

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by UserAnonyme • 0

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1.6k

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topGO significant enrichment genes IDs

7.0 years ago David ROUX ▴ 20

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1.4k

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deseq2 variance genes

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by hs.lansdell ▴ 20

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1.5k

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cnv genes genomic ranges splitByOverlap

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by julrodr80 ▴ 30

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964

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deseq2 genes

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by silviajserrano • 0

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3.2k

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deseq2 wald lrt genes significance

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by aziza ▴ 20

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3.0k

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heatmap rownames genes

10.3 years ago johnlee.johnson • 0

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1.9k

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datasets genes gene expression

updated 10.4 years ago by Steve Lianoglou ★ 13k • written 10.4 years ago by vavecilla • 0

12 results • Page 1 of 1

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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