Bioconductor Genes

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829

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DESeq2 genes Differential expressed

2.5 years ago Syed Zaheer ▴ 10

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1.7k

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GeneSetEnrichment genes genetogo

updated 3.4 years ago by Basti ▴ 780 • written 3.4 years ago by Noy • 0

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923

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R microRNA genes binding Site

6.3 years ago pengu447 • 0

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1.9k

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edger differential expression genes fold change

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by ilovesuperheroes1993 • 0

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1.1k

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deseq2 genes expression

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by UserAnonyme • 0

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1.5k

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topGO significant enrichment genes IDs

6.8 years ago David ROUX ▴ 20

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1.3k

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deseq2 variance genes

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by hs.lansdell ▴ 20

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1.4k

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cnv genes genomic ranges splitByOverlap

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by julrodr80 ▴ 30

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912

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deseq2 genes

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by silviajserrano • 0

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3.2k

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deseq2 wald lrt genes significance

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by aziza ▴ 20

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2.9k

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heatmap rownames genes

10.1 years ago johnlee.johnson • 0

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1.8k

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datasets genes gene expression

updated 10.2 years ago by Steve Lianoglou ★ 13k • written 10.2 years ago by vavecilla • 0

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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k

You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…

Comment: Using DESeq2 for age prediction by picasa1983 • 0

Thanks ! Do you have any idea how to do that ?

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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