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genes
•
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0
votes
2
replies
829
views
Deseq2 design
DESeq2
genes
Differential
expressed
2.5 years ago
Syed Zaheer
▴ 10
0
votes
1
reply
1.7k
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 3.4 years ago by
Basti
▴ 780 • written 3.4 years ago by
Noy
• 0
0
votes
1
reply
922
views
find genes near a microRNA binding site
R
microRNA
genes
binding Site
6.3 years ago
pengu447
• 0
2
votes
4
replies
1.9k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 6.3 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
ilovesuperheroes1993
• 0
1
vote
2
replies
1.1k
views
Two factors design with DESEq2
deseq2
genes
expression
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
UserAnonyme
• 0
1
vote
1
reply
1.5k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
6.8 years ago
David ROUX
▴ 20
0
votes
1
reply
1.3k
views
Running DESeq2 on top variable genes?
deseq2
variance
genes
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
hs.lansdell
▴ 20
2
votes
2
replies
1.4k
views
list fo genes by cnv
cnv
genes
genomic ranges
splitByOverlap
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
julrodr80
▴ 30
0
votes
1
reply
912
views
No differentyally expresses genes
deseq2
genes
updated 9.2 years ago by
Michael Love
43k • written 9.2 years ago by
silviajserrano
• 0
0
votes
3
replies
3.2k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 9.4 years ago by
Michael Love
43k • written 9.4 years ago by
aziza
▴ 20
0
votes
1
reply
2.9k
views
Display subset of rownames in large heatmap?
heatmap
rownames
genes
10.1 years ago
johnlee.johnson
• 0
0
votes
2
replies
1.8k
views
Help needed to identify common genes among datasets
datasets
genes
gene expression
updated 10.2 years ago by
Steve Lianoglou
★ 13k • written 10.2 years ago by
vavecilla
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction
by
picasa1983
• 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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