Bioconductor Genes

Showing : genes • reset

votes

replies

707

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DESeq2 genes Differential expressed

21 months ago Syed Zaheer ▴ 10

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1.3k

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GeneSetEnrichment genes genetogo

updated 2.6 years ago by Basti ▴ 780 • written 2.6 years ago by Noy • 0

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795

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R microRNA genes binding Site

5.6 years ago pengu447 • 0

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1.6k

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edger differential expression genes fold change

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by ilovesuperheroes1993 • 0

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896

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deseq2 genes expression

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by UserAnonyme • 0

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1.3k

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topGO significant enrichment genes IDs

6.0 years ago David ROUX ▴ 20

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1.1k

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deseq2 variance genes

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by hs.lansdell ▴ 20

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1.2k

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cnv genes genomic ranges splitByOverlap

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by julrodr80 ▴ 30

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808

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deseq2 genes

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by silviajserrano • 0

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2.9k

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deseq2 wald lrt genes significance

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by aziza ▴ 20

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2.7k

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heatmap rownames genes

9.4 years ago johnlee.johnson • 0

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1.5k

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datasets genes gene expression

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by vavecilla • 0

12 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k