Bioconductor Genes

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845

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DESeq2 genes Differential expressed

2.5 years ago Syed Zaheer ▴ 10

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1.7k

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GeneSetEnrichment genes genetogo

updated 3.4 years ago by Basti ▴ 780 • written 3.4 years ago by Noy • 0

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966

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R microRNA genes binding Site

6.4 years ago pengu447 • 0

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1.9k

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edger differential expression genes fold change

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by ilovesuperheroes1993 • 0

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1.1k

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deseq2 genes expression

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by UserAnonyme • 0

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1.5k

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topGO significant enrichment genes IDs

6.8 years ago David ROUX ▴ 20

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1.3k

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deseq2 variance genes

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by hs.lansdell ▴ 20

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1.4k

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cnv genes genomic ranges splitByOverlap

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by julrodr80 ▴ 30

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925

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deseq2 genes

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by silviajserrano • 0

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3.2k

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deseq2 wald lrt genes significance

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by aziza ▴ 20

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2.9k

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heatmap rownames genes

10.2 years ago johnlee.johnson • 0

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1.8k

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datasets genes gene expression

updated 10.2 years ago by Steve Lianoglou ★ 13k • written 10.2 years ago by vavecilla • 0

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Comment: Getting a large intercept with DESeq2 by Denise • 0

Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …

Comment: Error installing Seqinfo by shepherl 4.2k

Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week

Comment: APAlyzer by shepherl 4.2k

We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…

Answer: Error installing Seqinfo by fabio.marroni • 0

I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…

Comment: Getting a large intercept with DESeq2 by Michael Love 43k

Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…

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Answer: replace cat with message in glmTreat when lfc = 0

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors

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