Bioconductor Genes

Showing : genes • reset

votes

replies

803

views

DESeq2 genes Differential expressed

2.3 years ago Syed Zaheer ▴ 10

votes

1.6k

views

GeneSetEnrichment genes genetogo

updated 3.3 years ago by Basti ▴ 780 • written 3.3 years ago by Noy • 0

votes

890

views

R microRNA genes binding Site

6.2 years ago pengu447 • 0

votes

replies

1.9k

views

edger differential expression genes fold change

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by ilovesuperheroes1993 • 0

vote

replies

1.1k

views

deseq2 genes expression

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by UserAnonyme • 0

vote

1.5k

views

topGO significant enrichment genes IDs

6.6 years ago David ROUX ▴ 20

votes

1.3k

views

deseq2 variance genes

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by hs.lansdell ▴ 20

votes

replies

1.4k

views

cnv genes genomic ranges splitByOverlap

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by julrodr80 ▴ 30

votes

884

views

deseq2 genes

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by silviajserrano • 0

votes

replies

3.1k

views

deseq2 wald lrt genes significance

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by aziza ▴ 20

votes

2.9k

views

heatmap rownames genes

10.0 years ago johnlee.johnson • 0

votes

replies

1.7k

views

datasets genes gene expression

updated 10.0 years ago by Steve Lianoglou ★ 13k • written 10.0 years ago by vavecilla • 0

12 results • Page 1 of 1

Recent ...

Replies

Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Awards • All