Bioconductor Genesis

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GENESIS

17 months ago SuperDad • 0

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749

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GENESIS

20 months ago Stephanie M. Gogarten ▴ 890

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1.1k

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GENESIS GWASTools GDSfile

updated 23 months ago by Stephanie M. Gogarten ▴ 890 • written 23 months ago by Mindy wang • 0

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899

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GENESIS SeqVarTools

updated 24 months ago by Stephanie M. Gogarten ▴ 890 • written 24 months ago by pjuge • 0

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GENESIS autosome-only=FALSE? PCAir

updated 24 months ago by James W. MacDonald 68k • written 24 months ago by gabry.scata ▴ 10

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689

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GENESIS admixMap

2.0 years ago mailtoshivam13 • 0

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1.4k

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GENESIS

updated 2.3 years ago by Stephanie M. Gogarten ▴ 890 • written 2.4 years ago by SuperDad • 0

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693

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assocTestSingle GENESIS

written 2.7 years ago by SuperD • 0

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1.2k

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kingToMatrix GENESIS Plants

3.0 years ago Monica • 0

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gwas genesis p-value q-q-plot

updated 4.7 years ago by Anna • 0 • written 5.9 years ago by solanum • 0

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1.3k

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GENESIS

4.9 years ago Stephanie M. Gogarten ▴ 890

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1.0k

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GENESIS

5.0 years ago Stephanie M. Gogarten ▴ 890

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2.1k

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genesis effect allele association analysis

updated 5.2 years ago by Stephanie M. Gogarten ▴ 890 • written 5.2 years ago by ucbtapc • 0

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1.1k

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genesis gwastools

5.3 years ago Stephanie M. Gogarten ▴ 890

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1.4k

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genesis

updated 5.3 years ago by Stephanie M. Gogarten ▴ 890 • written 5.3 years ago by o.giannakopoulou • 0

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genesis gds SeqVarData

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.4 years ago by JT • 0

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2.3k

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Genesis

5.7 years ago alipka ▴ 10

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1.1k

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GENESIS

updated 5.8 years ago by Stephanie M. Gogarten ▴ 890 • written 5.8 years ago by lassana.a.samarakoon ▴ 10

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1.2k

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rna-seq tmixclust k-means clustering gene expression genesis

5.9 years ago astridite • 0

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1.2k

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genesis

6.0 years ago Stephanie M. Gogarten ▴ 890

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GENESIS

6.0 years ago Corey.Cox • 0

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1.4k

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GENESIS zscore wald

updated 6.1 years ago by Stephanie M. Gogarten ▴ 890 • written 6.1 years ago by lassana.a.samarakoon ▴ 10

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2.2k

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genesis output score

updated 6.1 years ago by Stephanie M. Gogarten ▴ 890 • written 6.1 years ago by lassana.a.samarakoon ▴ 10

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1.5k

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genesis admixmap

updated 6.1 years ago by Stephanie M. Gogarten ▴ 890 • written 6.1 years ago by GENOMIC_region • 0

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2.6k

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Genesis Installation

updated 6.2 years ago by Mike Smith ★ 6.6k • written 6.2 years ago by winstondunnmd ▴ 10

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1.7k

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genesis fitnullmodel gwas ascertainment

updated 6.3 years ago by mconomos ▴ 70 • written 6.3 years ago by ferranpauls10 • 0

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3.7k

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genesis admixmap

updated 6.5 years ago by Stephanie M. Gogarten ▴ 890 • written 6.5 years ago by GENOMIC_region • 0

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1.3k

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genesis

6.6 years ago Stephanie M. Gogarten ▴ 890

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3.3k

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genesis pcrelate gds

updated 6.7 years ago by Stephanie M. Gogarten ▴ 890 • written 6.7 years ago by o.giannakopoulou • 0

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2.3k

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genesis gwastools seqarray

7.1 years ago • updated 6.7 years ago Stephanie M. Gogarten ▴ 890

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1.3k

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GENESIS GWAS resampling resample statistics

6.7 years ago naglemi ▴ 10

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1.4k

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GENESIS GWAS AssocTestMM

updated 7.0 years ago by mconomos ▴ 70 • written 7.0 years ago by naglemi ▴ 10

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1.3k

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genesis pcrrelate gds

updated 7.0 years ago by Stephanie M. Gogarten ▴ 890 • written 7.0 years ago by roll • 0

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1.3k

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genesis snprelate

7.1 years ago Stephanie M. Gogarten ▴ 890

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1.4k

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GENESIS GWAS GDS

updated 7.1 years ago by zhengx ▴ 30 • written 7.1 years ago by naglemi ▴ 10

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1.1k

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genesis

7.2 years ago Stephanie M. Gogarten ▴ 890

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1.7k

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GENESIS assoctestmm GWAS

updated 7.3 years ago by mconomos ▴ 70 • written 7.3 years ago by naglemi ▴ 10

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2.0k

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LMM GWAS GENESIS assocTestMM

updated 7.3 years ago by mconomos ▴ 70 • written 7.3 years ago by naglemi ▴ 10

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2.3k

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genesis pcair

7.5 years ago GENOMIC_region • 0

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2.5k

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genesis

7.5 years ago Stephanie M. Gogarten ▴ 890

40 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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