Showing : genesis • reset
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230
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Conditional analysis
GENESIS
6 months ago SuperDad • 0
0
votes
1
reply
440
views
GENESIS: error in crossprod
GENESIS
9 months ago Stephanie M. Gogarten ▴ 870
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2
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716
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 11 months ago by ▴ 870 • written 11 months ago by • 0
0
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2
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621
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SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 12 months ago by ▴ 870 • written 12 months ago by • 0
1
vote
1
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762
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 12 months ago by 67k • written 12 months ago by ▴ 10
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483
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
13 months ago mailtoshivam13 • 0
2
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5
replies
1.0k
views
assocTestSingle output with GxE
GENESIS
updated 17 months ago by ▴ 870 • written 17 months ago by • 0
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1
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571
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Reference categories for factors
assocTestSingle GENESIS
written 21 months ago by • 0
0
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2
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908
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
2.1 years ago Monica • 0
1
vote
2
replies
4.7k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.8 years ago by • 0 • written 5.0 years ago by • 0
0
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1
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1.0k
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Approximations to Est and Est.SE in GENESIS
GENESIS
4.0 years ago Stephanie M. Gogarten ▴ 870
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0
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819
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X chromosome analyses for males in GENESIS
GENESIS
4.0 years ago Stephanie M. Gogarten ▴ 870
0
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3
replies
1.7k
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Alternate allele for GENESIS?
genesis effect allele association analysis
updated 4.3 years ago by ▴ 870 • written 4.3 years ago by • 0
0
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1
reply
944
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using GENESIS R package with non-human species
genesis gwastools
4.3 years ago Stephanie M. Gogarten ▴ 870
0
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2
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1.1k
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Association testing model in GENESIS
genesis
updated 4.4 years ago by ▴ 870 • written 4.4 years ago by • 0
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1
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1.4k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 4.4 years ago by ▴ 870 • written 4.5 years ago by • 0
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8
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1.8k
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Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.8 years ago alipka ▴ 10
2
votes
1
reply
818
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 4.8 years ago by ▴ 870 • written 4.8 years ago by ▴ 10
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0
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1.0k
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
4.9 years ago astridite • 0
2
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1
reply
963
views
Why did the Wald test disappear from GENESIS?
genesis
5.0 years ago Stephanie M. Gogarten ▴ 870
1
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3
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1.5k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
5.1 years ago Corey.Cox • 0
1
vote
1
reply
1.2k
views
Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 5.1 years ago by ▴ 870 • written 5.1 years ago by ▴ 10
3
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6
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1.7k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 5.1 years ago by ▴ 870 • written 5.1 years ago by ▴ 10
2
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4
replies
1.3k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 5.2 years ago by ▴ 870 • written 5.2 years ago by • 0
0
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3
replies
2.0k
views
Can't install Genesis
Genesis Installation
updated 5.3 years ago by ★ 6.6k • written 5.3 years ago by ▴ 10
0
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3
replies
1.4k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.3 years ago by ▴ 70 • written 5.3 years ago by • 0
6
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11
replies
3.1k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 5.6 years ago by ▴ 870 • written 5.6 years ago by • 0
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1
reply
1.1k
views
betas for binary outcome
genesis
5.6 years ago Stephanie M. Gogarten ▴ 870
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13
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2.7k
views
GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 5.7 years ago by ▴ 870 • written 5.7 years ago by • 0
4
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2
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2.0k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
6.1 years ago • updated 5.8 years ago Stephanie M. Gogarten ▴ 870
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1
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1.1k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.8 years ago naglemi ▴ 10
1
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1
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1.1k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.0 years ago by ▴ 70 • written 6.0 years ago by ▴ 10
1
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1
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1.1k
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 6.1 years ago by ▴ 870 • written 6.1 years ago by • 0
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1
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1.0k
views
Using previously calculated PCs in GENESIS
genesis snprelate
6.2 years ago Stephanie M. Gogarten ▴ 870
0
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1
reply
1.2k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.2 years ago by ▴ 30 • written 6.2 years ago by ▴ 10
0
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1
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899
views
selecting SNPs and samples in GENESIS
genesis
6.3 years ago Stephanie M. Gogarten ▴ 870
0
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3
replies
1.4k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by ▴ 10
3
votes
4
replies
1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by ▴ 10
2
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8
replies
1.9k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.5 years ago GENOMIC_region • 0
0
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7
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2.1k
views
GENESIS: king2mat: subscript out of bounds
genesis
6.5 years ago Stephanie M. Gogarten ▴ 870
40 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Popular Question to JennyS • 0
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