Bioconductor Genesis

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428

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GENESIS

20 months ago SuperDad • 0

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814

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GENESIS

23 months ago Stephanie M. Gogarten ▴ 890

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1.3k

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GENESIS GWASTools GDSfile

updated 2.1 years ago by Stephanie M. Gogarten ▴ 890 • written 2.1 years ago by Mindy wang • 0

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995

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GENESIS SeqVarTools

updated 2.2 years ago by Stephanie M. Gogarten ▴ 890 • written 2.2 years ago by pjuge • 0

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1.2k

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GENESIS autosome-only=FALSE? PCAir

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by gabry.scata ▴ 10

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765

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GENESIS admixMap

2.3 years ago mailtoshivam13 • 0

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1.5k

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GENESIS

updated 2.6 years ago by Stephanie M. Gogarten ▴ 890 • written 2.6 years ago by SuperDad • 0

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730

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assocTestSingle GENESIS

written 3.0 years ago by SuperD • 0

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1.3k

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kingToMatrix GENESIS Plants

3.3 years ago Monica • 0

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5.7k

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gwas genesis p-value q-q-plot

updated 5.0 years ago by Anna • 0 • written 6.1 years ago by solanum • 0

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1.4k

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GENESIS

5.1 years ago Stephanie M. Gogarten ▴ 890

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1.1k

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GENESIS

5.2 years ago Stephanie M. Gogarten ▴ 890

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2.3k

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genesis effect allele association analysis

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.4 years ago by ucbtapc • 0

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1.2k

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genesis gwastools

5.5 years ago Stephanie M. Gogarten ▴ 890

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1.5k

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genesis

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by o.giannakopoulou • 0

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1.9k

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genesis gds SeqVarData

updated 5.6 years ago by Stephanie M. Gogarten ▴ 890 • written 5.6 years ago by JT • 0

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2.5k

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Genesis

6.0 years ago alipka ▴ 10

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1.2k

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GENESIS

updated 6.0 years ago by Stephanie M. Gogarten ▴ 890 • written 6.0 years ago by lassana.a.samarakoon ▴ 10

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1.2k

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rna-seq tmixclust k-means clustering gene expression genesis

6.1 years ago astridite • 0

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1.2k

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genesis

6.2 years ago Stephanie M. Gogarten ▴ 890

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1.9k

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GENESIS

6.3 years ago Corey.Cox • 0

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1.5k

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GENESIS zscore wald

updated 6.3 years ago by Stephanie M. Gogarten ▴ 890 • written 6.3 years ago by lassana.a.samarakoon ▴ 10

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2.3k

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genesis output score

updated 6.3 years ago by Stephanie M. Gogarten ▴ 890 • written 6.3 years ago by lassana.a.samarakoon ▴ 10

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1.6k

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genesis admixmap

updated 6.4 years ago by Stephanie M. Gogarten ▴ 890 • written 6.4 years ago by GENOMIC_region • 0

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2.7k

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Genesis Installation

updated 6.5 years ago by Mike Smith ★ 6.6k • written 6.5 years ago by winstondunnmd ▴ 10

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1.8k

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genesis fitnullmodel gwas ascertainment

updated 6.5 years ago by mconomos ▴ 70 • written 6.5 years ago by ferranpauls10 • 0

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3.8k

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genesis admixmap

updated 6.8 years ago by Stephanie M. Gogarten ▴ 890 • written 6.8 years ago by GENOMIC_region • 0

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1.4k

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genesis

6.8 years ago Stephanie M. Gogarten ▴ 890

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3.6k

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genesis pcrelate gds

updated 6.9 years ago by Stephanie M. Gogarten ▴ 890 • written 6.9 years ago by o.giannakopoulou • 0

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2.4k

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genesis gwastools seqarray

7.3 years ago • updated 7.0 years ago Stephanie M. Gogarten ▴ 890

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1.4k

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GENESIS GWAS resampling resample statistics

7.0 years ago naglemi ▴ 10

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1.5k

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GENESIS GWAS AssocTestMM

updated 7.2 years ago by mconomos ▴ 70 • written 7.2 years ago by naglemi ▴ 10

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1.5k

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genesis pcrrelate gds

updated 7.2 years ago by Stephanie M. Gogarten ▴ 890 • written 7.2 years ago by roll • 0

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1.3k

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genesis snprelate

7.3 years ago Stephanie M. Gogarten ▴ 890

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1.5k

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GENESIS GWAS GDS

updated 7.3 years ago by zhengx ▴ 30 • written 7.3 years ago by naglemi ▴ 10

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1.2k

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genesis

7.5 years ago Stephanie M. Gogarten ▴ 890

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1.8k

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GENESIS assoctestmm GWAS

updated 7.5 years ago by mconomos ▴ 70 • written 7.5 years ago by naglemi ▴ 10

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2.1k

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LMM GWAS GENESIS assocTestMM

updated 7.5 years ago by mconomos ▴ 70 • written 7.5 years ago by naglemi ▴ 10

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2.4k

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genesis pcair

7.7 years ago GENOMIC_region • 0

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2.7k

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genesis

7.7 years ago Stephanie M. Gogarten ▴ 890

40 results • Page 1 of 1

Recent ...

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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k

Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …

Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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