Bioconductor Genesis

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GENESIS

19 months ago SuperDad • 0

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786

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GENESIS

22 months ago Stephanie M. Gogarten ▴ 890

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1.2k

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GENESIS GWASTools GDSfile

updated 2.0 years ago by Stephanie M. Gogarten ▴ 890 • written 2.0 years ago by Mindy wang • 0

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948

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GENESIS SeqVarTools

updated 2.1 years ago by Stephanie M. Gogarten ▴ 890 • written 2.1 years ago by pjuge • 0

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GENESIS autosome-only=FALSE? PCAir

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by gabry.scata ▴ 10

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726

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GENESIS admixMap

2.2 years ago mailtoshivam13 • 0

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1.5k

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GENESIS

updated 2.5 years ago by Stephanie M. Gogarten ▴ 890 • written 2.5 years ago by SuperDad • 0

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716

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assocTestSingle GENESIS

written 2.9 years ago by SuperD • 0

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1.3k

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kingToMatrix GENESIS Plants

3.2 years ago • updated 3.1 years ago Monica • 0

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5.6k

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gwas genesis p-value q-q-plot

updated 4.9 years ago by Anna • 0 • written 6.0 years ago by solanum • 0

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1.3k

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GENESIS

5.0 years ago Stephanie M. Gogarten ▴ 890

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1.1k

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GENESIS

5.1 years ago Stephanie M. Gogarten ▴ 890

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2.2k

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genesis effect allele association analysis

updated 5.3 years ago by Stephanie M. Gogarten ▴ 890 • written 5.3 years ago by ucbtapc • 0

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1.2k

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genesis gwastools

5.4 years ago Stephanie M. Gogarten ▴ 890

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1.5k

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genesis

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.4 years ago by o.giannakopoulou • 0

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1.8k

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genesis gds SeqVarData

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by JT • 0

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2.4k

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Genesis

5.8 years ago alipka ▴ 10

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1.1k

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GENESIS

updated 5.9 years ago by Stephanie M. Gogarten ▴ 890 • written 5.9 years ago by lassana.a.samarakoon ▴ 10

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1.2k

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rna-seq tmixclust k-means clustering gene expression genesis

6.0 years ago astridite • 0

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1.2k

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genesis

6.1 years ago Stephanie M. Gogarten ▴ 890

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GENESIS

6.2 years ago Corey.Cox • 0

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1.4k

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GENESIS zscore wald

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by lassana.a.samarakoon ▴ 10

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2.3k

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genesis output score

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by lassana.a.samarakoon ▴ 10

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1.6k

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genesis admixmap

updated 6.3 years ago by Stephanie M. Gogarten ▴ 890 • written 6.3 years ago by GENOMIC_region • 0

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2.7k

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Genesis Installation

updated 6.3 years ago by Mike Smith ★ 6.6k • written 6.4 years ago by winstondunnmd ▴ 10

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1.7k

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genesis fitnullmodel gwas ascertainment

updated 6.4 years ago by mconomos ▴ 70 • written 6.4 years ago by ferranpauls10 • 0

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3.7k

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genesis admixmap

updated 6.7 years ago by Stephanie M. Gogarten ▴ 890 • written 6.7 years ago by GENOMIC_region • 0

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1.3k

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genesis

6.7 years ago Stephanie M. Gogarten ▴ 890

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3.5k

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genesis pcrelate gds

updated 6.8 years ago by Stephanie M. Gogarten ▴ 890 • written 6.8 years ago by o.giannakopoulou • 0

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2.3k

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genesis gwastools seqarray

7.2 years ago • updated 6.9 years ago Stephanie M. Gogarten ▴ 890

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1.4k

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GENESIS GWAS resampling resample statistics

6.9 years ago naglemi ▴ 10

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1.4k

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GENESIS GWAS AssocTestMM

updated 7.1 years ago by mconomos ▴ 70 • written 7.1 years ago by naglemi ▴ 10

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1.4k

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genesis pcrrelate gds

updated 7.1 years ago by Stephanie M. Gogarten ▴ 890 • written 7.1 years ago by roll • 0

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1.3k

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genesis snprelate

7.2 years ago Stephanie M. Gogarten ▴ 890

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1.5k

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GENESIS GWAS GDS

updated 7.2 years ago by zhengx ▴ 30 • written 7.2 years ago by naglemi ▴ 10

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1.1k

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genesis

7.4 years ago Stephanie M. Gogarten ▴ 890

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1.7k

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GENESIS assoctestmm GWAS

updated 7.4 years ago by mconomos ▴ 70 • written 7.4 years ago by naglemi ▴ 10

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2.1k

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LMM GWAS GENESIS assocTestMM

updated 7.4 years ago by mconomos ▴ 70 • written 7.4 years ago by naglemi ▴ 10

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2.4k

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genesis pcair

7.6 years ago GENOMIC_region • 0

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2.6k

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genesis

7.6 years ago Stephanie M. Gogarten ▴ 890

40 results • Page 1 of 1

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180