Bioconductor Genesis

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GENESIS

10 months ago SuperDad • 0

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592

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GENESIS

13 months ago Stephanie M. Gogarten ▴ 890

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903

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GENESIS GWASTools GDSfile

updated 15 months ago by Stephanie M. Gogarten ▴ 890 • written 15 months ago by Mindy wang • 0

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741

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GENESIS SeqVarTools

updated 16 months ago by Stephanie M. Gogarten ▴ 890 • written 16 months ago by pjuge • 0

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925

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GENESIS autosome-only=FALSE? PCAir

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by gabry.scata ▴ 10

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576

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GENESIS admixMap

17 months ago mailtoshivam13 • 0

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1.2k

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GENESIS

updated 21 months ago by Stephanie M. Gogarten ▴ 890 • written 21 months ago by SuperDad • 0

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616

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assocTestSingle GENESIS

written 2.1 years ago by SuperD • 0

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1.0k

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kingToMatrix GENESIS Plants

2.4 years ago Monica • 0

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5.1k

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gwas genesis p-value q-q-plot

updated 4.1 years ago by Anna • 0 • written 5.3 years ago by solanum • 0

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1.1k

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GENESIS

4.3 years ago Stephanie M. Gogarten ▴ 890

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894

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GENESIS

4.4 years ago Stephanie M. Gogarten ▴ 890

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1.9k

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genesis effect allele association analysis

updated 4.6 years ago by Stephanie M. Gogarten ▴ 890 • written 4.6 years ago by ucbtapc • 0

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genesis gwastools

4.7 years ago Stephanie M. Gogarten ▴ 890

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1.2k

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genesis

updated 4.7 years ago by Stephanie M. Gogarten ▴ 890 • written 4.7 years ago by o.giannakopoulou • 0

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genesis gds SeqVarData

updated 4.8 years ago by Stephanie M. Gogarten ▴ 890 • written 4.8 years ago by JT • 0

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2.0k

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Genesis

5.1 years ago alipka ▴ 10

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908

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GENESIS

updated 5.2 years ago by Stephanie M. Gogarten ▴ 890 • written 5.2 years ago by lassana.a.samarakoon ▴ 10

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rna-seq tmixclust k-means clustering gene expression genesis

5.3 years ago astridite • 0

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1.0k

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genesis

5.4 years ago Stephanie M. Gogarten ▴ 890

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GENESIS

5.4 years ago Corey.Cox • 0

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GENESIS zscore wald

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by lassana.a.samarakoon ▴ 10

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1.9k

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genesis output score

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by lassana.a.samarakoon ▴ 10

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1.4k

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genesis admixmap

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by GENOMIC_region • 0

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2.3k

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Genesis Installation

updated 5.6 years ago by Mike Smith ★ 6.6k • written 5.6 years ago by winstondunnmd ▴ 10

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1.5k

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genesis fitnullmodel gwas ascertainment

updated 5.7 years ago by mconomos ▴ 70 • written 5.7 years ago by ferranpauls10 • 0

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3.4k

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genesis admixmap

updated 5.9 years ago by Stephanie M. Gogarten ▴ 890 • written 5.9 years ago by GENOMIC_region • 0

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1.2k

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genesis

6.0 years ago Stephanie M. Gogarten ▴ 890

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2.9k

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genesis pcrelate gds

updated 6.1 years ago by Stephanie M. Gogarten ▴ 890 • written 6.1 years ago by o.giannakopoulou • 0

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2.1k

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genesis gwastools seqarray

6.5 years ago • updated 6.1 years ago Stephanie M. Gogarten ▴ 890

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1.2k

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GENESIS GWAS resampling resample statistics

6.1 years ago naglemi ▴ 10

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1.2k

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GENESIS GWAS AssocTestMM

updated 6.4 years ago by mconomos ▴ 70 • written 6.4 years ago by naglemi ▴ 10

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1.2k

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genesis pcrrelate gds

updated 6.4 years ago by Stephanie M. Gogarten ▴ 890 • written 6.4 years ago by roll • 0

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1.1k

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genesis snprelate

6.5 years ago Stephanie M. Gogarten ▴ 890

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1.3k

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GENESIS GWAS GDS

updated 6.5 years ago by zhengx ▴ 30 • written 6.5 years ago by naglemi ▴ 10

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991

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genesis

6.6 years ago Stephanie M. Gogarten ▴ 890

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1.5k

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GENESIS assoctestmm GWAS

updated 6.7 years ago by mconomos ▴ 70 • written 6.7 years ago by naglemi ▴ 10

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1.8k

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LMM GWAS GENESIS assocTestMM

updated 6.7 years ago by mconomos ▴ 70 • written 6.7 years ago by naglemi ▴ 10

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2.1k

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genesis pcair

6.9 years ago GENOMIC_region • 0

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2.2k

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genesis

6.9 years ago Stephanie M. Gogarten ▴ 890

40 results • Page 1 of 1

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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

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