Showing : goTools • reset
2
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5
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How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 12 days ago by 65k • written 14 days ago by • 0
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
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2
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goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 11.8 years ago by 65k • written 11.8 years ago by ★ 13k
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3
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how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
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9
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1.8k
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ontoCompare (goTools) : goidvect error
GO goTools GO goTools
12.8 years ago Oana VIGY ▴ 80
0
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1.9k
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help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 13.6 years ago by ▴ 550 • written 13.6 years ago by ▴ 100
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goTools question
probe goTools probe goTools
13.6 years ago Pete Shepard ▴ 240
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975
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obtaining GOID from nuID
GO goTools lumi GO goTools lumi
14.3 years ago Md.Mamunur Rashid ▴ 260
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1
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1.0k
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question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 50
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question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
14.8 years ago Oana VIGY ▴ 80
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1
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1.2k
views
(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 14.8 years ago by ▴ 270 • written 14.8 years ago by ▴ 300
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1.1k
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question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.9 years ago by ▴ 60 • written 14.9 years ago by ▴ 50
0
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4
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1.4k
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error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 160
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2
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1.2k
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using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 15.5 years ago by ▴ 90 • written 15.5 years ago by ▴ 830
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0
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goTools package - extract genes
GO probe goTools GO probe goTools
15.9 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
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1
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898
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Reporting results of HyperGTest
GO goTools GO goTools
updated 16.1 years ago by ▴ 20 • written 16.1 years ago by ▴ 320
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1
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1.0k
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Arabidopsis GO Pie Charts
goTools Category goTools Category
16.6 years ago Naomi Altman ★ 6.0k
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4
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disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
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3
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1.3k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 80
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1.0k
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Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.1 years ago Paquet, Agnes ▴ 500
0
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0
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926
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
17.2 years ago Paquet, Agnes ▴ 500
0
votes
1
reply
869
views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 40
0
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1
reply
870
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Using ontoCompare with local GO database
GO goTools GO goTools
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 100
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1
reply
1.1k
views
goTools problem
goTools oligo goTools oligo
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 30
0
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1
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1.2k
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 17.7 years ago by ▴ 870 • written 17.7 years ago by ▴ 340
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12
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2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.2 years ago michael watson IAH-C ★ 3.4k
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2
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1.0k
views
GO Tools
GO goTools GO goTools
19.0 years ago Paquet, Agnes ▴ 500
0
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0
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887
views
GO Tools
goTools goTools
19.0 years ago Mayte Suarez-Farinas ▴ 300
0
votes
1
reply
894
views
annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 19.3 years ago by ★ 2.9k • written 19.3 years ago by ▴ 300
0
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2
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1.2k
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goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
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1
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1.3k
views
GOtools: argument is of length zero
goTools goTools
updated 19.8 years ago by ▴ 500 • written 19.8 years ago by ▴ 320
31 results • Page 1 of 1
Recent ...
Replies
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and gives inflated significance, as we showed in our 2012 pap…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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