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Showing :
gotools
•
reset
0
votes
12
replies
2.0k
views
Quick start to linking GO terms and microarray data
Microarray
GO
affy
PROcess
goTools
GOstats
Microarray
GO
affy
PROcess
goTools
GOstats
18.2 years ago
michael watson IAH-C
★ 3.4k
0
votes
4
replies
1.4k
views
error with ontoCompare (goTools)
GO
hgu133a
graph
goTools
GO
hgu133a
graph
goTools
updated 15.3 years ago by
Alex Sanchez
▴ 90 • written 15.3 years ago by
Wolfgang Raffelsberger
▴ 160
0
votes
3
replies
4.8k
views
how to get gene list for given GO terms?
Pathways
GO
Cancer
PROcess
goTools
genomes
Pathways
GO
Cancer
PROcess
goTools
genomes
updated 22 months ago by
pengmin.wang.1
• 0 • written 12.2 years ago by
Marc Carlson
★ 7.2k
0
votes
2
replies
1.9k
views
help in downloading some packages.
goTools
sigPathway
topGO
goTools
sigPathway
topGO
updated 13.6 years ago by
Michael Dondrup
▴ 550 • written 13.6 years ago by
Veerendra GP
▴ 100
0
votes
3
replies
1.3k
views
GO terms not found in goTools and GO
GO
Biobase
annotate
goTools
biomaRt
GO
Biobase
annotate
goTools
biomaRt
updated 16.8 years ago by
Seth Falcon
★ 7.4k • written 16.8 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
9
replies
1.8k
views
ontoCompare (goTools) : goidvect error
GO
goTools
GO
goTools
12.7 years ago
Oana VIGY
▴ 80
0
votes
2
replies
1.2k
views
using GSEAlm with GO geneSetCollections
GO
affy
goTools
Category
GSEABase
GSEAlm
GO
affy
goTools
Category
GSEABase
GSEAlm
updated 15.5 years ago by
Dykema, Karl
▴ 90 • written 15.5 years ago by
Mark W Kimpel
▴ 830
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO
hgu133plus2
annotate
geneplotter
graph
Rgraphviz
PROcess
goTools
biomaRt
Category
GO
updated 16.6 years ago by
Steffen
▴ 500 • written 16.7 years ago by
Dick Beyer
★ 1.4k
0
votes
2
replies
1.1k
views
goTools and plot and go group names
GO
graph
goTools
GO
graph
goTools
updated 19.7 years ago by
Paquet, Agnes
▴ 500 • written 19.7 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
2
replies
1.0k
views
GO Tools
GO
goTools
GO
goTools
19.0 years ago
Paquet, Agnes
▴ 500
2
votes
5
replies
148
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
updated 1 day ago by
James W. MacDonald
65k • written 2 days ago by
bandconductor
• 0
0
votes
1
reply
1.3k
views
GOtools: argument is of length zero
goTools
goTools
updated 19.7 years ago by
Paquet, Agnes
▴ 500 • written 19.7 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
1
reply
890
views
annotation packages and goTools
Annotation
moe430a
moe430b
goTools
Annotation
moe430a
moe430b
goTools
updated 19.2 years ago by
John Zhang
★ 2.9k • written 19.2 years ago by
Straubhaar, Juerg
▴ 300
0
votes
1
reply
1.2k
views
GO annotation/analysis for ath1121501
Annotation
GO
ath1121501
goTools
GOstats
biomaRt
Annotation
GO
ath1121501
goTools
updated 17.7 years ago by
Nianhua Li
▴ 870 • written 17.7 years ago by
Ann Hess
▴ 340
0
votes
1
reply
1.0k
views
goTools problem
goTools
oligo
goTools
oligo
updated 17.3 years ago by
Paquet, Agnes
▴ 500 • written 17.3 years ago by
Jorrit Boekel
▴ 30
0
votes
1
reply
858
views
Using ontoCompare with local GO database
GO
goTools
GO
goTools
updated 17.3 years ago by
Paquet, Agnes
▴ 500 • written 17.3 years ago by
Alessandro Bruselles
▴ 100
0
votes
1
reply
864
views
problems with library goCluster
GO
goTools
GOstats
goCluster
GO
goTools
GOstats
goCluster
updated 17.3 years ago by
James W. MacDonald
65k • written 17.3 years ago by
Caroline Reiff
▴ 40
0
votes
1
reply
1.0k
views
Arabidopsis GO Pie Charts
goTools
Category
goTools
Category
16.5 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
885
views
Reporting results of HyperGTest
GO
goTools
GO
goTools
updated 16.1 years ago by
Pankaj Chopra
▴ 20 • written 16.1 years ago by
Paolo Innocenti
▴ 320
0
votes
1
reply
1.1k
views
question about ontoCompare() performance change
Transcription
GO
hgu133a
goTools
Transcription
GO
hgu133a
goTools
updated 14.9 years ago by
Jean-Pierre Desvignes
▴ 60 • written 14.9 years ago by
Scott Markel
▴ 50
0
votes
1
reply
1.2k
views
(no subject)
Pathways
Clustering
goTools
GOstats
Pathways
Clustering
goTools
GOstats
updated 14.8 years ago by
anupam sinha
▴ 270 • written 14.8 years ago by
McGee, Monnie
▴ 300
0
votes
1
reply
1.0k
views
question about ontoCompare() performance change
Transcription
GO
hgu133a
goTools
Transcription
GO
hgu133a
goTools
updated 14.5 years ago by
Seth Falcon
★ 7.4k • written 14.5 years ago by
Scott Markel
▴ 50
0
votes
2
replies
1.8k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription
Microarray
Annotation
GO
goTools
Transcription
Microarray
Annotation
GO
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
Guest User
★ 13k
0
votes
0
replies
753
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE
hypeR
goTools
GOstats
topGO
3.4 years ago
Madza Farias-Virgens
• 0
0
votes
0
replies
966
views
obtaining GOID from nuID
GO
goTools
lumi
GO
goTools
lumi
14.3 years ago
Md.Mamunur Rashid
▴ 260
0
votes
0
replies
850
views
goTools question
probe
goTools
probe
goTools
13.6 years ago
Pete Shepard
▴ 240
0
votes
0
replies
1.0k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray
GO
graph
goTools
Category
oligo
Microarray
GO
graph
goTools
Category
oligo
17.0 years ago
Paquet, Agnes
▴ 500
0
votes
0
replies
776
views
goTools package - extract genes
GO
probe
goTools
GO
probe
goTools
15.9 years ago
Anne Dirks Højfeldt / Region Nordjylland
▴ 10
0
votes
0
replies
917
views
question about the value retured by function ontoCompare()
GO
hgu133a
probe
PROcess
goTools
oligo
GO
hgu133a
probe
PROcess
goTools
oligo
17.2 years ago
Paquet, Agnes
▴ 500
0
votes
0
replies
880
views
GO Tools
goTools
goTools
19.0 years ago
Mayte Suarez-Farinas
▴ 300
0
votes
0
replies
741
views
question about ontoCompare() performance change
GO
PROcess
goTools
GO
PROcess
goTools
14.8 years ago
Oana VIGY
▴ 80
31 results • Page
1 of 1
Recent ...
Replies
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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