Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
gviz
•
reset
2
votes
32
replies
4.9k
views
Gviz error 'Expectation Failed'
gviz
ucsc
8.0 years ago • updated 7.9 years ago
Tom
▴ 10
28
votes
25
replies
5.9k
views
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
Gviz
rtracklayer
updated 6.8 years ago by
aina.jene
▴ 10 • written 7.3 years ago by
Ramiro Magno
▴ 100
5
votes
14
replies
4.9k
views
gene symbols in Gviz
Gviz
8.9 years ago
Bogdan
▴ 670
0
votes
12
replies
2.1k
views
Gviz: feature protein_coding not working
gviz
biomart
updated 7.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.8 years ago by
Simon B.
• 0
6
votes
11
replies
2.5k
views
Gviz ChromHMM colouring for AnnotationTracks
gviz
chromHMM
updated 6.5 years ago by
Tiphaine Martin
▴ 40 • written 7.5 years ago by
gammyknee
▴ 10
0
votes
11
replies
1.9k
views
Givz Doesn't plot coverage genetracks that are aligned against ensemble ref
gviz
6.6 years ago
ta_awwad
▴ 10
3
votes
10
replies
3.0k
views
Gviz: How to color parts of transcript in BiomartGeneRegionTrack?
gviz
updated 7.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.3 years ago by
stianlagstad
▴ 90
3
votes
10
replies
2.0k
views
Shifted dashed frame in Gviz boxplot
gviz
boxplot
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.1 years ago by
enricoferrero
▴ 660
2
votes
9
replies
1.9k
views
Gviz: decreasing tick resolution
gviz
gviz-package
updated 5.4 years ago by
Robert Ivanek
▴ 730 • written 5.4 years ago by
willbradshaw
• 0
0
votes
9
replies
1.2k
views
GVIZ stacking error
gviz
4.8 years ago
d.depledge
• 0
1
vote
9
replies
2.2k
views
Gviz IdeogramTrack Hsapiens/Mmusculus error
gviz
9.0 years ago • updated 8.9 years ago
Merienne Nicolas
▴ 120
0
votes
8
replies
2.1k
views
Gviz and AnnotateTrack and memory usage
gviz
updated 8.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
Bogdan
▴ 670
0
votes
8
replies
2.1k
views
Gviz - Plot genes and data from - strand (3'-5') in 5'-3' direction
Gviz
Gviz
updated 10.7 years ago by
Robert Ivanek
▴ 730 • written 10.7 years ago by
Jager, Dominik
▴ 50
3
votes
8
replies
1.7k
views
How to plot transcript biotype annotation into GVIZ?
gviz
7.7 years ago
tiago211287
▴ 10
1
vote
7
replies
2.0k
views
Gviz: reducing whitespace around tracks
gviz
updated 19 months ago by
Elise
• 0 • written 7.8 years ago by
jdbowes
• 0
0
votes
7
replies
2.4k
views
question about Gviz
Gviz
Gviz
11.3 years ago
Bogdan
▴ 670
0
votes
7
replies
4.4k
views
gviz: controlling track labels
gviz
7.8 years ago
Janet Young
▴ 740
6
votes
7
replies
3.0k
views
Error: Failed to set session genome to...
gviz
rtracklayer
updated 8.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.0 years ago by
liz.ingsimmons
▴ 140
1
vote
7
replies
1.8k
views
Gviz for Rnor_6
gviz
updated 7.9 years ago by
James W. MacDonald
66k • written 7.9 years ago by
motutaj
• 0
5
votes
7
replies
1.8k
views
Gviz: How to plot UTRs with GRanges object?
gviz
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.0 years ago by
stianlagstad
▴ 90
1
vote
6
replies
4.1k
views
Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
software error
bug
crash
Gviz
updated 7.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.9 years ago by
Philip Lijnzaad
▴ 160
3
votes
6
replies
2.7k
views
Gviz: AlignmentsTrack from a bam file with non-UCSC chromosome names
gviz
updated 7.4 years ago by
Johannes Rainer
★ 2.0k • written 8.3 years ago by
stianlagstad
▴ 90
0
votes
6
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 11.1 years ago by
Robert Ivanek
▴ 730 • written 11.1 years ago by
Guest User
★ 13k
0
votes
6
replies
2.3k
views
Gviz: axes related parameters
Coverage
Gviz
Coverage
Gviz
updated 10.2 years ago by
Steve Lianoglou
★ 13k • written 10.2 years ago by
Maxim
▴ 170
0
votes
6
replies
2.7k
views
Displaying very deep coverage in Gviz
Coverage
Gviz
Coverage
Gviz
updated 10.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.0 years ago by
Lance Parsons
▴ 130
2
votes
6
replies
2.8k
views
IdeogramTrack from Gviz with chromosome name "4" rather "chr4"
Gviz
updated 8.8 years ago by
Robert Ivanek
▴ 730 • written 8.8 years ago by
tangming2005
▴ 190
0
votes
6
replies
2.9k
views
Gviz::plotTracks for BiomartGeneRegionTrack() produces empty plots
gviz
visualization
9.3 years ago
Asta Laiho
▴ 120
2
votes
6
replies
1.8k
views
Gviz color alignments by read strand
Gviz
updated 5.4 years ago by
Robert Ivanek
▴ 730 • written 5.6 years ago by
Chris Stubben
▴ 40
3
votes
6
replies
1.8k
views
gviz ideogramTrack connection error
gviz-package
gviz
updated 6.3 years ago by
Robert Ivanek
▴ 730 • written 6.3 years ago by
alperyilmaz
▴ 20
0
votes
6
replies
1.8k
views
Gviz/Biostrings memory issue?
gviz
biostrings
7.5 years ago
stianlagstad
▴ 90
2
votes
6
replies
4.6k
views
Gviz Color Filling
Gviz
updated 7.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.7 years ago by
dustar1986
▴ 10
2
votes
6
replies
3.7k
views
Gviz change color of groups
gviz-package
gviz
updated 5.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 5.9 years ago by
franceschini.gianmarco
• 0
2
votes
5
replies
2.2k
views
GVIZ shows error if plotting only one id
gviz
updated 8.9 years ago by
dbrawand
• 0 • written 9.1 years ago by
tonja.r
▴ 80
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.4 years ago
Andy91
▴ 60
2
votes
5
replies
1.9k
views
Gviz - display/indicate soft-clipped bases - indicate supplementary alignments
gviz
bam
pacbio
updated 8.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.0 years ago by
thackl
• 0
0
votes
5
replies
2.3k
views
Gviz - BiomartGeneRegionTrack and gene symbol
gviz
8.3 years ago
romain.fenouil
▴ 10
1
vote
5
replies
1.6k
views
Gviz single side margin for plotTracks
gviz
grid
layout
updated 5.4 years ago by
Robert Ivanek
▴ 730 • written 5.5 years ago by
alex.gos90
▴ 10
1
vote
5
replies
2.7k
views
plotting interactions in gviz (Chia-Pet, HiC, 5C). New feature?
gviz
updated 9.2 years ago by
Robert Ivanek
▴ 730 • written 9.3 years ago by
doyourun
• 0
1
vote
5
replies
2.2k
views
Gviz AlignmentTrack problem
Gviz
updated 8.1 years ago by
Robert Ivanek
▴ 730 • written 8.1 years ago by
yuyaxuan0
• 0
1
vote
5
replies
1.0k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.3 years ago by
James W. MacDonald
66k • written 4.3 years ago by
sinha.puja
▴ 10
4
votes
5
replies
2.4k
views
Gviz: Plot only exons?
gviz
8.1 years ago
stianlagstad
▴ 90
0
votes
5
replies
1.3k
views
error when plotting aligned reads depending on the length of the displayed region
gviz
plottracks
alignmentstrack
updated 7.3 years ago by
hesham.gibriel
• 0 • written 7.3 years ago by
TimothéeFlutre
▴ 80
1
vote
5
replies
2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.2 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
2
votes
5
replies
2.6k
views
Plot data from VCF using Gviz?
gviz
variantannotation
vcf
updated 8.5 years ago by
Valerie Obenchain
★ 6.8k • written 8.5 years ago by
Johannes Rainer
★ 2.0k
0
votes
5
replies
3.5k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage
Annotation
graph
Gviz
Coverage
Annotation
graph
Gviz
updated 10.1 years ago by
Lance Parsons
▴ 130 • written 10.1 years ago by
Aliaksei Holik
▴ 350
2
votes
5
replies
1.7k
views
Error loading Gviz package object path is not exported by namespace:Rsamtools
gviz
rsamtools
updated 5.3 years ago by
solutionsweb770
• 0 • written 5.4 years ago by
frequena.sanchez
• 0
0
votes
5
replies
1.8k
views
Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
17 months ago • updated 7 months ago
Daniel E. Weeks
▴ 30
0
votes
4
replies
1.7k
views
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
gviz
gviz-package
rtracklayer
http
6.3 years ago
enricoferrero
▴ 660
1
vote
4
replies
2.6k
views
It is possible to use Gviz without a valid UCSC genome?
gviz
UCSC
updated 8.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.5 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
vnyirongo
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Awards
• All
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
bas_work
▴ 30
Popular Question
to
landenshanie
▴ 40
Popular Question
to
minardsmitha
▴ 10
Locations
• All
Ukraine,
just now
Germany,
3 minutes ago
Greece,
8 minutes ago
UPF, Barcelona, Spain,
9 minutes ago
Spain,
12 minutes ago
Traffic: 789 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6