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Showing :
gwas
•
reset
3
votes
4
replies
1.5k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 5.8 years ago by
mconomos
▴ 70 • written 5.8 years ago by
naglemi
▴ 10
2
votes
0
replies
1.4k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
7.9 years ago
enridomenici
▴ 10
1
vote
1
reply
928
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 5.5 years ago by
mconomos
▴ 70 • written 5.5 years ago by
naglemi
▴ 10
1
vote
2
replies
4.1k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.2 years ago by
Anna
• 0 • written 4.4 years ago by
solanum
• 0
0
votes
0
replies
870
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
5.7 years ago
zhu
• 0
0
votes
1
reply
978
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.6 years ago by
zhengx
▴ 30 • written 5.6 years ago by
naglemi
▴ 10
0
votes
1
reply
977
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.2 years ago
naglemi
▴ 10
0
votes
0
replies
740
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
5.2 years ago
pwjeffries
• 0
0
votes
3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 4.8 years ago by
mconomos
▴ 70 • written 4.8 years ago by
ferranpauls10
• 0
0
votes
0
replies
910
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
4.1 years ago
jiyeon.choi2
• 0
0
votes
1
reply
680
views
gwas power calculation for quantitative traits
power
GWAS
written 2.7 years ago by
rajya82
• 0
0
votes
0
replies
701
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
2.1 years ago
helene.ruffieux
• 0
0
votes
0
replies
744
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
23 months ago
Sarah
• 0
0
votes
4
replies
760
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
13 months ago
Weiqiong
• 0
0
votes
0
replies
1.1k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.7 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
752
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
23 months ago
helene.ruffieux
• 0
0
votes
0
replies
1.1k
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
6.8 years ago
IV
▴ 30
0
votes
1
reply
931
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
5.8 years ago
GENOMIC_region
• 0
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 5.8 years ago by
mconomos
▴ 70 • written 5.8 years ago by
naglemi
▴ 10
19 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0
by
James W. MacDonald
65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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